rs222966176 SNP Detail

Summary

• ID
  rs222966176
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:113656895 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCTGCCCAG CCCCGCAGAA
  CAGACACACA GCCTGAAAGC ATAGCCAGGC ACTGACTGGC AGGAGAAGGC AGAAGGCCCC
  TCCTCCATGG TTGGGGGTCC AGCGTGGCTT CCTTGGGGAG ATGGCATCCC AAGTGGAGTC
  TTTGGAATGA GGAGTGGAAC AAGGTCATGG TGTAGACTGT GTCACGGCAG GTCTTTAGCT
  Y
  GCCGCGTTCA GCATGTAGCT TTGTGGGGAG GTTGAGAAAA GACAGGAAAG TGTTATTTAA
  AGACAGCACT GGGGTCAACT ATGTGGTGCC CCACATCTGT AATCCCTGCA CTGAACACTT
  AGGAAGCTGA GGCAGGAAGT TCCACATTTG GGGGAGTTCC AGGCCAGCCT GGGCTACACT
  GATCCCTTAA CAGTAACCCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321649790	CHEV_5_113938049	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs222966176					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:113656895 () rs orientation: forward

Symbol	Name	Function Class
Rr617638	regulatory region 617638	1886 bp distal
Tssr48022	transcription start site region 48022	1810 bp upstream
Tssr48023	transcription start site region 48023	1870 bp upstream
Tssr52639	transcription start site region 52639	1861 bp upstream
Wscd2	WSC domain containing 2	within coordinates