rs222966202 SNP Detail

Summary

• ID
  rs222966202
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:103205777 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTATTTCTC TCCCACACAT
  TCCGATGATT TTATATTACC CTACCAAGTT TAAAATTAAA CCTACCAACT ACTTTTCTCC
  AAGTGAAACT TGATGTCCGT TCCTTTTGTG TTGCTAGAAG ACATACATTA ACAAAGTTTG
  AAAGAAAGTT AGTGTCTCTG TGTTTAATAT TAAAGGATAT ATTATTGCAC ATTACCTGGT
  W
  GGTTTAAGAA TTACTGTATA ATTCCAATAT ATATTAACCC AAGGTGAGAT TTTTTAATGG
  TATTTTAAAG GTCTTCTTAT ATGTTTCTGG AAGAGGAGTG TTTTGTCATC TAATTAACAG
  TAAATAGGGA GTTTTTAAAA CTAGATGATT TTAGCTCAAA ATAAAGACAG GACGCCTTTC
  TATAAATTAT TGAAACATCT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss381552237	MGP_WTSI_10_102832550	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs222966202					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss381552237	MGP_WTSI_10_102832550	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:103205777 () rs orientation: forward

Symbol	Name	Function Class
6430590A10Rik	RIKEN cDNA 6430590A10 gene	647 bp upstream
Cpgi2165	CpG island 2165	951 bp distal
Gm66970	predicted gene, 66970	1250 bp upstream
Rr385217	regulatory region 385217	within coordinates
Rr438424	regulatory region 438424	1453 bp distal
Rr438425	regulatory region 438425	952 bp distal
Slc6a15	solute carrier family 6 (neurotransmitter transporter), member 15	within coordinates
Tssr95607	transcription start site region 95607	570 bp downstream
Tssr95608	transcription start site region 95608	535 bp downstream
Tssr99159	transcription start site region 99159	847 bp upstream