rs222967123 SNP Detail

Summary

• ID
  rs222967123
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:3282443 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCACGGGTA AGGGACTCCA
  GCCCTGTGCG CCGAGCAGCG CTGCAGCGGT TACACCCGCC GCGCACGTGC GGCCGCTCGA
  CGCCCGTCCC GCCCCGTCCC CACCCCCGCG CCGTCCGATT GGCCAGAGCT ATCTCCAGGC
  AGCGGAGCTC AAAGCCCATT GGCCGCCGCA GCATTCGGAG TGAGCTCATC CTCTGCGAGC
  R
  CTTGTAAACA ACGGTGGGAG GCAGCTTGCC TGCCTGTTCC GCCAAGCGCC CCGCCAGCCT
  TTACTGTGTA GCGGATGCTG TGAGCCAGGC CCCATGCTCA CAGTCCCCGG GGAGAAGCTG
  TGTGAGGGCT CTGAGTCACC CAGAAGTTTG ACCACCTGCC AAAGGCAATG GGTGTGTTCT
  GATTTGAATT CAAAGCTTTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss382239549	MGP_WTSI_11_3232446	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs222967123					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss382239549	MGP_WTSI_11_3232446	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:3282443 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2477	CpG island 2477	within coordinates
Gm12592	predicted gene 12592	1253 bp upstream
Gm74265	predicted gene, 74265	393 bp downstream
Pik3ip1	phosphoinositide-3-kinase interacting protein 1	within coordinates
Rr402383	regulatory region 402383	534 bp downstream
Rr402384	regulatory region 402384	within coordinates
Rr441527	regulatory region 441527	1625 bp distal
Rr441528	regulatory region 441528	775 bp distal
Rr441529	regulatory region 441529	124 bp distal
Tssr3405	transcription start site region 3405	1684 bp downstream
Tssr3406	transcription start site region 3406	42 bp upstream
Tssr100039	transcription start site region 100039	1902 bp downstream
Tssr100040	transcription start site region 100040	1749 bp downstream
Tssr100041	transcription start site region 100041	1694 bp downstream
Tssr100042	transcription start site region 100042	1663 bp downstream
Tssr100043	transcription start site region 100043	1631 bp downstream
Tssr100044	transcription start site region 100044	1613 bp downstream
Tssr100045	transcription start site region 100045	1600 bp downstream
Tssr100046	transcription start site region 100046	1531 bp downstream
Tssr100047	transcription start site region 100047	1509 bp downstream
Tssr100048	transcription start site region 100048	1482 bp downstream
Tssr100049	transcription start site region 100049	within coordinates
Tssr100050	transcription start site region 100050	18 bp upstream
Tssr100051	transcription start site region 100051	51 bp upstream
Tssr106459	transcription start site region 106459	1242 bp upstream
Tssr106460	transcription start site region 106460	167 bp upstream
Tssr106461	transcription start site region 106461	142 bp upstream
Tssr106462	transcription start site region 106462	1805 bp downstream