rs222967232 SNP Detail

Summary

• ID
  rs222967232
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:107148251 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCCACCCTG GCAGCTCCTG
  CAGAGAAGTG GACTCGGGCC ATGCTGGTGA TCTTCTGTAG TATGGTGTGA GCATGGGAGG
  GGCCTTATCC GCAAGCAGAC ACACACAGTG GGCTCATGAG AAGGTGACAC TGTGCATAGC
  CCTTCTTGCT GGAGGGAAGC CCTCCAGCCT TCTCTACTAC ATACCTGATG GATCCTGTAT
  Y
  GGGCCATCCA TCTTCTCTCT ACAATAATAA AAACTAGTGT TTTCCAAGGA ATGTTTTCTA
  GTATGCTAAT TCAGGATGAG CATCTCCAAC CCAAAACTCT AAAATCTAGA CGTCTCCAAA
  GTAGAGAACT TTCTGACATA ATGTGACCCA TCCAAAATTC TACACAGTAG AACCTTGTTG
  CATGCACAAA ACTACTTAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320864894	CHEV_3_107043853	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs222967232					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:107148251 () rs orientation: forward

Symbol	Name	Function Class
Gm66085	predicted gene, 66085	931 bp upstream
Prok1	prokineticin 1	1228 bp upstream
Rr582947	regulatory region 582947	589 bp proximal
Rr582948	regulatory region 582948	942 bp proximal
Tssr31192	transcription start site region 31192	854 bp upstream
Tssr31193	transcription start site region 31193	925 bp upstream
Tssr31194	transcription start site region 31194	980 bp upstream