rs222969467 SNP Detail

Summary

• ID
  rs222969467
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:51370641 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CAGCTCAAA GAGAGGCCAA CTTACAAGTG
  CTTTCAACAG CACCAGACCC AACACACAGA GATAGACACC ACCAGGAGAA ATAATTCTTG
  CCATAGACCT TACTTCCACC TGATTGTCCC TGTCTTCACA GCTCTAGCCT AGAGGCTACC
  W
  TCAATGAAAA ACACCTGTGT GAGAATAAGA GGGCCCTGGG GACTATATGC ACTAAACTTC
  AGTATCAGAG GTCTGATGGG GAGTGTGGTG GGTCAGCTCG TGGAGGAAAA GAACCCTTAC
  AATGGATCTG GAGATGTGAC CACATTCTCT                                 
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323300652	CHEV_10_51214351	CHEVERUD	SCREENING_POP	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs222969467					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:51370641 () rs orientation: forward

Symbol	Name	Function Class
Gm40645	predicted gene, 40645	within coordinates
Gm49339	predicted gene, 49339	within coordinates
Lilrb4a	leukocyte immunoglobulin-like receptor, subfamily B, member 4A	within coordinates
Tssr93270	transcription start site region 93270	1804 bp downstream
Tssr93271	transcription start site region 93271	1686 bp downstream
Tssr93272	transcription start site region 93272	1631 bp downstream
Tssr93273	transcription start site region 93273	1360 bp downstream
Tssr93274	transcription start site region 93274	827 bp downstream
Tssr93275	transcription start site region 93275	694 bp downstream
Tssr93276	transcription start site region 93276	640 bp downstream
Tssr93277	transcription start site region 93277	592 bp downstream
Tssr93278	transcription start site region 93278	556 bp downstream
Tssr93279	transcription start site region 93279	400 bp downstream
Tssr93280	transcription start site region 93280	36 bp upstream
Tssr93281	transcription start site region 93281	76 bp upstream
Tssr93282	transcription start site region 93282	100 bp upstream
Tssr93283	transcription start site region 93283	177 bp upstream
Tssr93284	transcription start site region 93284	511 bp upstream
Tssr93285	transcription start site region 93285	736 bp upstream
Tssr93286	transcription start site region 93286	850 bp upstream
Tssr93287	transcription start site region 93287	1212 bp upstream
Tssr93288	transcription start site region 93288	1472 bp upstream
Tssr93289	transcription start site region 93289	1540 bp upstream
Tssr97556	transcription start site region 97556	34 bp upstream
Tssr97557	transcription start site region 97557	289 bp downstream
Tssr97558	transcription start site region 97558	1476 bp downstream
Tssr97559	transcription start site region 97559	1946 bp downstream