rs222970095 SNP Detail

Summary

• ID
  rs222970095
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:134656644 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    atccagcaa ggtatagaac atatgtggta
  gtgcaggtct gttatcccag aactctggag gtagcagtca ggatcagaaa atgaagatta
  gctgaggcta Atgagggcac aggtatttca tcccacgaga ggcagtagga tctctgaatt
  Y
  aagaccagga tggtcttcag tgagttccag gacgggcaga cagtataggg agactcaaga
  aacaaaGACA TATTAAAAGT GATTCAGAGG ACGACAGTGA CAGCAACTGA AGGTGGTGAC
  AGATTTGTCA AGGCATATTG AGTATATGCT                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321350014	CHEV_4_134485248	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs222970095					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:134656644 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15054	CpG island 15054	1340 bp proximal
Rr367744	regulatory region 367744	701 bp upstream
Rr601870	regulatory region 601870	393 bp distal
Rr601871	regulatory region 601871	within coordinates
Rr601872	regulatory region 601872	1075 bp proximal
Rsrp1	arginine/serine rich protein 1	1963 bp downstream
Syf2	SYF2 homolog, RNA splicing factor (S. cerevisiae)	1647 bp upstream
Tssr39596	transcription start site region 39596	1566 bp upstream
Tssr39597	transcription start site region 39597	1585 bp upstream
Tssr39598	transcription start site region 39598	1613 bp upstream
Tssr39599	transcription start site region 39599	1884 bp upstream
Tssr43947	transcription start site region 43947	1962 bp upstream