rs222972454 SNP Detail

Summary

• ID
  rs222972454
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:148894476 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACAAGGCAC ACAACACAGA
  AGACAACATG GATGGAAGCT CTGAGGGAGT GAAAGGGGTC CAACACCCAA TACCCAGTCA
  TTCGTCAGAA CAGAACAGAA CAGCAGTACA AAGGAAGATG TCATCTCAGA GAAGAAGGCC
  CTGGAGAGGA GCAGCAGGGT TGTGACATTG GAAAGCACTT GAAGATTAAT TCCTAATTTA
  W
  AAAAAAAAAG TCACAGAGAT TGGAGATCAA CTCATAATTA AAACTTCACA ATTCAAAAGA
  TAAGGCAAAT GGAGCAAGCT GGTTACACAC CTGTAAAAGA TAGATGCTCC AGCACACAGA
  GGCAGGAGGA TTGCCACAAG TTCAAGGTCA GCCTGGTCCT CACAGTAAGA TCCAGGAGAG
  AATATGTATG ATATGTATAC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MOLF/EiJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	RF/J	SM/J	SPRET/EiJ	ST/bJ	WSB/EiJ
ss367143096	MGP_WTSI_5_149769242	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	A	T	T	T	T	T	T	T	T	T	A	T	T	A	T	T	A	T	T	T	A	T	T	T	T	T	A	T	T	A	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MOLF/EiJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	RF/J	SM/J	SPRET/EiJ	ST/bJ	WSB/EiJ
rs222972454					SNP	T	T	T	A	T	T	T	T	T	T	T	T	T	A	T	T	A	T	T	A	T	T	T	A	T	T	T	T	T	A	T	T	A	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss367143096	MGP_WTSI_5_149769242	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:148894476 () rs orientation: forward

Symbol	Name	Function Class
1810059H22Rik	RIKEN cDNA 1810059H22 gene	within coordinates
Cpgi17084	CpG island 17084	1481 bp proximal
Gm15406	predicted gene 15406	within coordinates
Gm15409	predicted gene 15409	within coordinates
Gm52833	predicted gene, 52833	within coordinates
Rr111639	regulatory region 111639	725 bp proximal
Rr124806	regulatory region 124806	924 bp proximal
Rr378799	regulatory region 378799	within coordinates
Rr378800	regulatory region 378800	1721 bp upstream
Tssr49867	transcription start site region 49867	1597 bp upstream
Tssr49868	transcription start site region 49868	1653 bp upstream
Tssr54595	transcription start site region 54595	1904 bp upstream
Tssr54596	transcription start site region 54596	1614 bp downstream
Tssr54597	transcription start site region 54597	1788 bp downstream
Tssr54598	transcription start site region 54598	1893 bp downstream