rs222973130 SNP Detail

Summary

• ID
  rs222973130
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:38221968 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGATGAACAA GACAAATCAA
  GTCACTACTG TCTTTTTGGA AAGGAGGGCA AACCAAGAGG CTAGCACCTA CAGCGTAGCG
  GAGAGAATTG AGGCAAAAAA GGGAGGCCAG CCAGGTCGAG CCTTCCAAGT GACTGTGAGG
  AGTTAAGATC CTGTTCAGGT CTTACAGGCC AGAGGAGGGC TTTTGCAGCG ACAGAGCATC
  Y
  GTCATTTGAT TTATGAATTA AAGGAACTGG TGAGTCATGT AGAAGATGTT CGTAGAGAGG
  AGTGGAGCAG AGAATCAGTA AATAAATAAA TAACCAGCTT CAAACCGGAT GGCTCCTAGA
  GCTGCTGTCG TAGAACGACT TCGAGGTAGC AGTGTTGAGG TTTTGTGGTG AAATTGGATG
  TGAGGTCCAA AAGCAAGCAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss388308277	MGP_WTSI_13_38129861	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs222973130					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss388308277	MGP_WTSI_13_38129861	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:38221968 () rs orientation: forward

Symbol	Name	Function Class
Cage1	cancer antigen 1	923 bp upstream
Cpgi5461	CpG island 5461	362 bp distal
Riok1	RIO kinase 1	within coordinates
Rr281252	regulatory region 281252	within coordinates
Rr369679	regulatory region 369679	537 bp downstream
Tssr119342	transcription start site region 119342	682 bp downstream
Tssr122123	transcription start site region 122123	1079 bp upstream
Tssr122124	transcription start site region 122124	1045 bp upstream
Tssr122125	transcription start site region 122125	834 bp upstream
Tssr122126	transcription start site region 122126	808 bp upstream
Tssr122127	transcription start site region 122127	60 bp upstream
Tssr122128	transcription start site region 122128	40 bp upstream
Tssr122129	transcription start site region 122129	8 bp upstream