rs222978054 SNP Detail

Summary

• ID
  rs222978054
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:100166553 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCATTGAGGA CATCTAGTAG
  GTCTCCTGAA AGTACATTCC AGGGGCCAGG GGTCAGGGGT CTTTTTTCTT TGTTTGTTGG
  TGTTTAGCTG TTTTGTTTTG TTTCTTCTTT CTCCGATCCG CTCACTCTGC TCCAAAGATT
  TATCTATTTG TTATTTGTAA GTGCACTGTA GCTGTCTTTG GACACCTCAG AAGAGGGCAT
  Y
  GGATCCCATT GCAGATGGTT GTGAGCCACC ATGTGGTTGC TGGGAATTAA ACTCAGAACC
  TTTGGAAGAG CAGTCAGTGC TCTCAACTGT GAGCCATCTC TCCAGCCCCC CAAACCAGAT
  GTTATTTGTT TTATGTTTAA TTTTTTTCAA TTTACCTTAT CTATCTATCT ATCTATCTAT
  CTATCTATCT ATCTATTTAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325082832	CHEV_15_100099103	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs222978054					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:100166553 () rs orientation: forward

Symbol	Name	Function Class
Gm56733	predicted gene, 56733	1370 bp upstream
Rr391198	regulatory region 391198	within coordinates
Tssr4717	transcription start site region 4717	1416 bp upstream
Tssr133109	transcription start site region 133109	511 bp upstream