rs222978602 SNP Detail

Summary

• ID
  rs222978602
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:8618227 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCTATGAGT TTATCATCTC
  ACTACCCATC TTTAGGTATT TCCTAAGAGT ATCAAGTTGC TAAAAATCTC AATAATTACA
  TACTATATTT ATCTTATTAA AACACTTTTG TAGCTAAAAG TCTTTTCCGG ATCAAATTTA
  TTATCATAAT ATTTTTTTGT ATCTGTCAAA TTAAAAGTTT ACTGTTGCCA GGCGTGGTGG
  Y
  ACACGCCTTT AATCCCAGCA CTTGGGAGGC AGAAGCAGGT GGATTTCTGA GTTCGAGTCC
  AGCCTGAGCT ACAAAGTGAG TTCCAGGATA GCCAGGGCTA CACAGAGAAA CCCTGTCTCA
  AAAAAAAAAA AAAAAAAAAA AAAAGAACTT CACAAAAAAC AACAACAAAA AAGTTTACTG
  TTTTATTTAT TATCTACAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321463553	CHEV_5_8568227	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs222978602					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:8618227 () rs orientation: forward

Symbol	Name	Function Class
Gm72884	predicted gene, 72884	within coordinates
Rr130297	regulatory region 130297	627 bp distal
Rundc3b	RUN domain containing 3B	within coordinates
Tssr45118	transcription start site region 45118	1117 bp downstream
Tssr45119	transcription start site region 45119	1104 bp downstream