GGGGCTGGAA AGGTGTCGCT CAGGGACTAA GTACTTGCCT ATCCTACAGG GGGTCCCTAG ACTCAGTCCT AGCACCACCC CACCCTATTC CCCCTCAAAA AGGAAAAGAA TCTCAGACCC AGAAAGAACC TTTTGCAAAT ACCAAGCAAT GCCACCCTAA CCCATCCTTT AGTCTGAGCA TTTCAGAGAA GCAAGGATTC Y AGGATGGCAA GAATGAGGGG CTGTTAAGCA AGGAATGGTG TATTGTGGGT GGGCTTCCAT GAAGAACTGG CTACTTAGCC CAGGGAGCTA GCTCCTCCCA CACTCACCCC TCAAAGCAAG ACCCCAAAAT ACAACTGCAC TCACATCCAG GTAGTTTTTG AGTAACTCTG ACACTGGCTC CGTGGTCTTA GGCGATGACT Y = C/T Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129P2/OlaHsd |
129S1/SvImJ |
129S5/SvEvBrd |
A/J |
AKR/J |
B10.RIII-H2 |
BALB/cByJ |
BALB/cJ |
BTBR T<+> Itpr3 |
BUB/BnJ |
C3H/HeH |
C3H/HeJ |
C57BL/6J |
C57BL/6NJ |
C57BL/10J |
C57BL/10SnJ |
C57BR/cdJ |
C57L/J |
C58/J |
CAST/EiJ |
CBA/J |
CE/J |
CZECHII/EiJ |
DBA/1J |
DBA/2J |
FVB/NJ |
I/LnJ |
JF1/MsJ |
KK/HlJ |
LEWES/EiJ |
LG/J |
LP/J |
MA/MyJ |
MOLF/EiJ |
NOD/ShiLtJ |
NON/ShiLtJ |
NZB/BlNJ |
NZO/HlLtJ |
NZW/LacJ |
PL/J |
PWK/PhJ |
QSi3/Ianm |
QSi5/Ianm |
RF/J |
RIIIS/J |
SEA/GnJ |
SJL/J |
SM/J |
SPRET/EiJ |
ST/bJ |
SWR/J |
WSB/EiJ |
ZALENDE/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss373450066 | MGP_WTSI_7_149571219 | EVA_MGPV3 | EVA_MGPV3 | f | SNP | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | C | T | T | T | T |
SNP Consensus Information | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
SNP | Consensus Type | 129P2/OlaHsd |
129S1/SvImJ |
129S5/SvEvBrd |
A/J |
AKR/J |
B10.RIII-H2 |
BALB/cByJ |
BALB/cJ |
BTBR T<+> Itpr3 |
BUB/BnJ |
C3H/HeH |
C3H/HeJ |
C57BL/6J |
C57BL/6NJ |
C57BL/10J |
C57BL/10SnJ |
C57BR/cdJ |
C57L/J |
C58/J |
CAST/EiJ |
CBA/J |
CE/J |
CZECHII/EiJ |
DBA/1J |
DBA/2J |
FVB/NJ |
I/LnJ |
JF1/MsJ |
KK/HlJ |
LEWES/EiJ |
LG/J |
LP/J |
MA/MyJ |
MOLF/EiJ |
NOD/ShiLtJ |
NON/ShiLtJ |
NZB/BlNJ |
NZO/HlLtJ |
NZW/LacJ |
PL/J |
PWK/PhJ |
QSi3/Ianm |
QSi5/Ianm |
RF/J |
RIIIS/J |
SEA/GnJ |
SJL/J |
SM/J |
SPRET/EiJ |
ST/bJ |
SWR/J |
WSB/EiJ |
ZALENDE/EiJ |
||||
rs222982752 | SNP | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | C | T | T | T | T |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss373450066 | MGP_WTSI_7_149571219 | SC_MOUSE_GENOMES | SC_MOUSE_GENOMES | f | SNP | C/T |
Location: Chr7:141939051 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Ctsd | cathepsin D | within coordinates | ||||||
Rr381604 | regulatory region 381604 | 894 bp upstream | ||||||
Tssr70144 | transcription start site region 70144 | 1839 bp downstream | ||||||
Tssr70145 | transcription start site region 70145 | 144 bp upstream | ||||||
Tssr70146 | transcription start site region 70146 | 176 bp upstream | ||||||
Tssr70147 | transcription start site region 70147 | 1686 bp upstream | ||||||
Tssr75784 | transcription start site region 75784 | 1848 bp upstream | ||||||
Tssr75785 | transcription start site region 75785 | 1819 bp upstream | ||||||
Tssr75786 | transcription start site region 75786 | 1778 bp upstream | ||||||
Tssr75787 | transcription start site region 75787 | 192 bp downstream | ||||||
Tssr75788 | transcription start site region 75788 | 279 bp downstream | ||||||
Tssr75789 | transcription start site region 75789 | 302 bp downstream | ||||||
Tssr75790 | transcription start site region 75790 | 565 bp downstream | ||||||
Tssr75791 | transcription start site region 75791 | 593 bp downstream | ||||||
Tssr75792 | transcription start site region 75792 | 614 bp downstream | ||||||
Tssr75793 | transcription start site region 75793 | 1357 bp downstream | ||||||
Tssr75794 | transcription start site region 75794 | 1511 bp downstream | ||||||
Tssr75795 | transcription start site region 75795 | 1535 bp downstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
||
Citing These Resources Funding Information Warranty Disclaimer, Privacy Notice, Licensing, & Copyright Send questions and comments to User Support. |
last database update 12/10/2024 MGI 6.24 |
![]() |
|