rs222989998 SNP Detail

Summary

• ID
  rs222989998
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:76497939 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGAACCCAG GCAAATACAT
  AACTAAAGGG CTCAATGTGG GATAGGACTT GCCTCTTACC AAGTCTGAAC GAGAGCTTTC
  ATGGGTCTGT TTGGACTGTC GGAGATTGCT TGGTGCCAGC TGCAGAGATA TTCCATGGCT
  GTGCCCACCA TGGCTACAAG GCCCATCTTT CTCAGAATCC TGTGGAAAAA CTGGTCAGAG
  Y
  CTGTGAAGAC CTTACCCATC CCACCTAGTG GTTCCCCAGA GCCTGACCTG GTCCCTGGGC
  AACAAGAGGT TGAAGAAGCT CTCAAACAGG AAGAAGATGT AGAAGCCTCC AAGTACAGCC
  AGCAGGCGCC AGGTGGCCTG CCCACCAACG CCCACCTCCT CCTCATGGGT GTGACCCTCT
  CCACCATGTG TGTGCAGTCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss394618284	MGP_WTSI_15_76444169	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	T	T	C	C	C	T	T	C	T	C	C	C	C	C	C	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs222989998					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	T	T	C	C	C	T	T	C	T	C	C	C	C	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss394618284	MGP_WTSI_15_76444169	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:76497939 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7242	CpG island 7242	296 bp distal
Gm62519	predicted gene, 62519	within coordinates
Rr311946	regulatory region 311946	538 bp distal
Slc39a4	solute carrier family 39 (zinc transporter), member 4	within coordinates
Tssr135019	transcription start site region 135019	1024 bp upstream
Tssr135020	transcription start site region 135020	777 bp upstream
Tssr135021	transcription start site region 135021	767 bp upstream
Tssr135022	transcription start site region 135022	478 bp downstream
Tssr135023	transcription start site region 135023	618 bp downstream
Tssr135024	transcription start site region 135024	1302 bp downstream