rs222991004 SNP Detail

Summary

• ID
  rs222991004
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:152682277 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTACT CAATTTTTTA TATTAAGACA
  K
  AATCTTACTA GATTGCCCAA GGCAG                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320068345	CHEV_1_154653656	CHEVERUD	SCREENING_POP	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs222991004					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:152682277 () rs orientation: forward

Symbol	Name	Function Class
Ncf2	neutrophil cytosolic factor 2	Intron
Rr420547	regulatory region 420547	997 bp proximal
Tssr9423	transcription start site region 9423	1246 bp upstream
Tssr9424	transcription start site region 9424	1293 bp upstream
Tssr9425	transcription start site region 9425	1301 bp upstream
Tssr9426	transcription start site region 9426	1351 bp upstream
Tssr9427	transcription start site region 9427	1379 bp upstream
Tssr9428	transcription start site region 9428	1392 bp upstream
Tssr9429	transcription start site region 9429	1422 bp upstream
Tssr14234	transcription start site region 14234	1784 bp downstream