rs222995109 SNP Detail

Summary

• ID
  rs222995109
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:3335565 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACTAGTGTC CCTACACCTC
  AGGCAAGTTA ATTAGCCAAC TATGAAATGA TAAAAATAGT GCCTATTCTG AGGATTAGAA
  GAATATTCTG TGTAAGATGC TTACCACAGT GCCTGCCACA TGGTACATGT CTGACAAATG
  GAACCACTAT GACCCAGTGA CAGCTGTGGC AGAATTAAGT TAATACAAAT TATATATAGC
  Y
  GCTACTATTT TGGGCCTTGT TTTCTATTTG AGAATTTAGC AATCTTTCCA CAAGGATTTT
  ACCCAAAAGA ATATATCTCA AAGGTAATTT CTTTCCATTT GTGTAGCACA ACTTTAGTTT
  ATGTTCATAT TTTTTTCTGC AAACATATGC TTCCTGTAGT TTCCTAAGTA GTATATGTGT
  ATATGTATGT ATATATATAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss352905791	MGP_WTSI_2_3251800	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs222995109					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss352905791	MGP_WTSI_2_3251800	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:3335565 () rs orientation: forward

Symbol	Name	Function Class
Acbd7	acyl-Coenzyme A binding domain containing 7	Intron
Cpgi11150	CpG island 11150	1625 bp distal
Rpp38	ribonuclease P/MRP 38 subunit	1885 bp upstream
Rr396749	regulatory region 396749	1692 bp downstream
Rr550889	regulatory region 550889	1896 bp distal
Rr550890	regulatory region 550890	1395 bp distal
Rr550891	regulatory region 550891	1150 bp proximal
Rr550892	regulatory region 550892	1651 bp proximal
Tssr15888	transcription start site region 15888	1365 bp downstream
Tssr15889	transcription start site region 15889	1631 bp upstream
Tssr22357	transcription start site region 22357	1878 bp upstream
Tssr22358	transcription start site region 22358	1454 bp downstream