rs222996350 SNP Detail

Summary

• ID
  rs222996350
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:122524132 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGAACTAAC CAGCTCTGCT
  TTGGAGAAGG GGCTGGAGCC CCGCCACCGG CGCCTTGGGG CAACGGCCGT CGAGCAGCTG
  GTGCTGGCCG CCCGAGCCGG GAGGGCGACT CTCGCCGGGC GGGGATGGTG GACGAGCCGG
  TGGGGACTCG CCCGAGCGCG GCCGCCACTC GGCCGGGCGC TGCCCGCCAG GGGGCGACGC
  R
  ACGCGGGGTC CGCAGCCGGC GACCCGCAGC GAAGAGGCGG CGGGGGCAGT AGGGGAGCCG
  GTCGGGCACT CACGGAACTC CGTCGGCCCC CAGAGTCTCC CGAGTCCACC ATCCGAGGAG
  TTCGCAAACG AGCGCCCCAC CTTTGCTATG TTGCCCTTTG GAGACAAAAC GAGGTACTTC
  CTTCAACATC CCGCTGGCCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss359508372	MGP_WTSI_3_122433401	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	G	A	A	G	G	A	A	G	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs222996350					SNP	A	A	G	A	A	G	G	A	A	G	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359508372	MGP_WTSI_3_122433401	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:122524132 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13771	CpG island 13771	within coordinates
Pde5a	phosphodiesterase 5A, cGMP-specific	within coordinates
Tssr31509	transcription start site region 31509	1488 bp downstream
Tssr31510	transcription start site region 31510	1468 bp downstream
Tssr31511	transcription start site region 31511	1349 bp downstream
Tssr31512	transcription start site region 31512	1301 bp downstream
Tssr31513	transcription start site region 31513	1250 bp downstream
Tssr31514	transcription start site region 31514	748 bp downstream
Tssr31515	transcription start site region 31515	614 bp downstream
Tssr31516	transcription start site region 31516	589 bp downstream
Tssr31517	transcription start site region 31517	554 bp downstream
Tssr31518	transcription start site region 31518	426 bp downstream
Tssr31519	transcription start site region 31519	364 bp downstream
Tssr31520	transcription start site region 31520	330 bp downstream
Tssr31521	transcription start site region 31521	244 bp downstream
Tssr31522	transcription start site region 31522	222 bp downstream