rs223000018 SNP Detail

Summary

• ID
  rs223000018
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:4217539 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGGGGGCCG GTGAAGCTAA
  AAGTGAAGGA CGGGCAGGCG CCCCGGGGGA GGGGTGATCC TCGACAGGCC CGGACAGCTC
  CCGGCTCTCC TGACACCTTT CGCTTTCCTC TTGCGTGTCC GCCTGCGACC TTTCCCCACC
  CCGGCCTCTT TCCTGGTTGC ACCACTTCCT CTCATTCCAA AGTATGTGGA TTTTTTTGGG
  S
  GGGGGGGGGG CTGTAGCAAG CAGGGGTGAA AGATGATTTG GTTGGAGAGT GGGCACCTGC
  AGAACAAACA GGTGGAAAGT TCTCTATAGG GCCTCATTGA GGAAGATGGG ATTAAAGGCA
  ATCGTTTTAG GAAGCCAGAG TCTAGTGGCA GTTTTAAGAG ATGGTCTACA GAAACCCCAG
  CTCCCAGCCT GCACGGCCTG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ
ss382256031	MGP_WTSI_11_4167542	EVA_MGPV3	EVA_MGPV3	f	SNP	C	G	C	G	C	C	C	G	C	C	C	G	G	C	C	G	C	C	C	C	C	C	G	G	C	C	C	C	G	G	C	G	G	G	C	G	G	C	C	C	C	C	C	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ
rs223000018					SNP	C	G	C	G	C	C	C	G	C	C	C	G	G	C	C	G	C	C	C	C	C	C	G	G	C	C	C	C	G	G	C	G	G	G	C	G	G	C	C	C	C	C	C	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss382256031	MGP_WTSI_11_4167542	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:4217539 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2511	CpG island 2511	409 bp distal
D11Mit16.1	DNA segment, Chr 11, Massachusetts Institute of Technology 16.1	1961 bp proximal
Lif	leukemia inhibitory factor	within coordinates
Rr385518	regulatory region 385518	within coordinates
Rr441798	regulatory region 441798	1790 bp distal
Rr441799	regulatory region 441799	434 bp distal
Rr441800	regulatory region 441800	within coordinates
Rr441801	regulatory region 441801	1027 bp proximal
Tssr100122	transcription start site region 100122	1042 bp downstream
Tssr100123	transcription start site region 100123	995 bp downstream
Tssr100124	transcription start site region 100124	866 bp downstream