rs223010543 SNP Detail

Summary

• ID
  rs223010543
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:7868594 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACTGCCACC AAGAAAAGAT
  TGTCACTGAT AAGTTTCCTC CCCGTGAATC GCAAATAATT TATAGCAACC TCACTCACTA
  CACCGCTCAT TTTCTGTACT CCCGTACTCT GGAAAGAATT TCCTTCCACG GAGAGGAAGA
  ACTAGGAGGG ACACAGGAGT CGCCGTAGGA AGGCTCCGTG CGGCCGGGCA CTTACGTGCC
  R
  TGGCCAATGC CACAGGCGCG CGGTCGGCGC TGCTGGGTGG CAGCACCAGC CGCGGTTCTG
  GGTTCTCCCG GCCCGCCGAG TGTGACTTCC GTCGCGGCCC GCCGAGGCTC CGCGACCACC
  GTCCGGGCCG CCCAATTAGG GGCTTTCCGA CCCCCGCACG GAGCCCGAGG GGCGGGGGAC
  ACGGCCGCCT CGCGGAGGGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325523063	CHEV_18_7868592	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs223010543					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:7868594 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9688	CpG island 9688	within coordinates
Gm9993	predicted gene 9993	within coordinates
Rr405554	regulatory region 405554	373 bp upstream
Rr533616	regulatory region 533616	within coordinates
Rr533617	regulatory region 533617	509 bp proximal
Rr533618	regulatory region 533618	918 bp proximal
Tssr149978	transcription start site region 149978	100 bp downstream
Tssr149979	transcription start site region 149979	229 bp upstream
Tssr149980	transcription start site region 149980	283 bp upstream
Tssr149981	transcription start site region 149981	545 bp upstream
Tssr149982	transcription start site region 149982	565 bp upstream
Tssr149983	transcription start site region 149983	620 bp upstream
Tssr149984	transcription start site region 149984	713 bp upstream
Tssr149985	transcription start site region 149985	748 bp upstream
Tssr149986	transcription start site region 149986	1113 bp upstream
Tssr149987	transcription start site region 149987	1281 bp upstream
Tssr152379	transcription start site region 152379	467 bp downstream
Wac	WW domain containing adaptor with coiled-coil	238 bp upstream