rs223021340 SNP Detail

Summary

• ID
  rs223021340
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:63545963 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACCTCCATT AATATAATCA
  GGGGGGAAAC CCACAGGTAG GAAGAGGCCC ATCTTTCAGG TGACTCTAGA TCGGATCAAA
  TTGGCAACTG AGATTCACCA TCACATAGTC TCAAGGGACT TTGGATCTCA TCAAGGCCAG
  GAAAGTGGGG ACACAACTTA AGCCAAATCA AAACCCGGAG AAGAGCTAAA TACCGCCCCC
  Y
  CCCCCCCCCC CCTGCAAGCC ACCCACTCAG AAGTGCGGAG AAAAGAGAGT GCTTGATAAG
  GCACTGCACG GTGATTGTGC TGTAACAGAA TATTTCAGGC TTCAACTAGC ATCCTCCAAG
  ATCTATGTGC GCCCGTCTCC TGCCCCCACC ACACTCATAT GCCTCGGTCC TTTTCCCAGG
  ACTCCAGAAT GTGAGTGTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CE/J	CZECHII/EiJ	FVB/NJ	NON/ShiLtJ	RIIIS/J	SWR/J
ss394306603	MGP_WTSI_15_63505669	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CE/J	CZECHII/EiJ	FVB/NJ	NON/ShiLtJ	RIIIS/J	SWR/J
rs223021340					SNP	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss394306603	MGP_WTSI_15_63505669	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:63545963 () rs orientation: forward

Symbol	Name	Function Class
Rr1380	regulatory region 1380	723 bp proximal
Rr390832	regulatory region 390832	1409 bp upstream
Rr406926	regulatory region 406926	within coordinates