rs223024519 SNP Detail

Summary

• ID
  rs223024519
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:184466438 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTATGATGTC CCAGTATCAG
  GGACAGGGGT ACTAACTATA TCAAGGAATG GAGGGGTATA GACAGTTGAG GGCAATGGTG
  CCTGGGACGA GAGGGGCCGG AAATCCTGTC TAGCAGGGAG CAGAGGGTGG ACTTGTGACA
  AGTACAGAGG CCACCGGAGG TGAGTTTTGG GCTAAAGTTC TGGTGATGCG GTGAGAGACC
  K
  GTTCATTAAC TTCACTGGGT ATTAGAGAAA GCAAGTCACT ACTAGCCTAG GGAGAGAGTA
  TCTAGGCTGC CTGTCTCTGT TGCCGGTCTT TTCTAACAGC CTTGTAATTC AGTTGCGATT
  CCAGTTTAAC CTCAAGACGT CCAGACAGCG AAGCGGTCTA TAGCCAAGTC CCAGCTCAAA
  ATGACGCTTC GCCCAGAGGC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320168846	CHEV_1_186558120	CHEVERUD	SCREENING_POP	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs223024519					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:184466438 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1158	CpG island 1158	1002 bp distal
Cpgi1159	CpG island 1159	334 bp proximal
Gm34342	predicted gene, 34342	within coordinates
Hlx	H2.0-like homeobox	1748 bp upstream
Rr396693	regulatory region 396693	1391 bp downstream
Rr425266	regulatory region 425266	1457 bp distal
Rr425267	regulatory region 425267	74 bp distal
Rr425268	regulatory region 425268	within coordinates
Tssr10589	transcription start site region 10589	1437 bp downstream
Tssr10590	transcription start site region 10590	1165 bp upstream
Tssr15642	transcription start site region 15642	1802 bp upstream
Tssr15643	transcription start site region 15643	1750 bp upstream
Tssr15644	transcription start site region 15644	1716 bp upstream
Tssr15645	transcription start site region 15645	1696 bp upstream
Tssr15646	transcription start site region 15646	1614 bp upstream
Tssr15647	transcription start site region 15647	1547 bp upstream
Tssr15648	transcription start site region 15648	779 bp downstream