rs223027375 SNP Detail

Summary

• ID
  rs223027375
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:60178427 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    gacagactg gctgacaagc ccctggtgtc
  tgcctgtctt tgcccccaag tctgagattg cagatctcca aggtgaatcc tagcctttat
  gtagccactg gggacgcaag ccggagctcc tcctgcttgt gcagcaaaga tctcaccctc
  Y
  gagcagccat ctcctcagtc cTGCTAGCGC TTCCTTTATG TCACTATTTC CTCACTAACA
  TCAAACTAAA AACAAATTGT AGAATGAGCC GAGAAATCTG CTAGAAACTC TTCTTTAGAT
  AGACCTTTAA TTTTTGTTTT TTTAAGAATG                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324360223	CHEV_13_60131974	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs223027375					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:60178427 () rs orientation: forward

Symbol	Name	Function Class
A530065N20Rik	RIKEN cDNA A530046M15 gene	within coordinates
Rr284562	regulatory region 284562	228 bp distal
Tssr120109	transcription start site region 120109	984 bp downstream
Tssr120110	transcription start site region 120110	920 bp downstream
Tssr120111	transcription start site region 120111	904 bp downstream