rs223027443 SNP Detail

Summary

• ID
  rs223027443
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:11890409 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGGTTGCAC CCTAGTAGTG
  TTTGCGAAAA CACTCCCAGA AAACAAAAGT CACATGGCGA AATTTAAATA TATGATCCTG
  CTCCCAAGCT CACCACGCTT TCAGGAAGGA GCAACTTGGA TTCTAACTTG AGGCTTCAGA
  ACAGTACCTT ACACAGGGGA GATTTCCCCA GCCCATTAGT GTGCTTGGCC CCCTCTCTCC
  R
  TACCCAGTCC ATAGAATGAG GTGCTGTGTA ACCCTTTTAT GACCTTGAGC TTCAAAATGA
  TGTCACAATA AGCAGGGACT GGTTTCCTTC TGTCCACCCT GACCTCCAGC TACTTGTGAG
  CCGTAGACAA GAAGCTGAGG TAGCCAGTTC GTGGCTTAAC CAAAACATTG TTCCTTCTTA
  GAGGCTACCA GAGAGGCAGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322494116	CHEV_8_11840409	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs223027443					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:11890409 () rs orientation: forward

Symbol	Name	Function Class
Gm15875	predicted gene 15875	within coordinates
Rr659647	regulatory region 659647	822 bp proximal
Tex29	testis expressed 29	79 bp upstream
Tssr76253	transcription start site region 76253	92 bp upstream
Tssr76254	transcription start site region 76254	105 bp upstream
Tssr76255	transcription start site region 76255	159 bp upstream