rs223029358 SNP Detail

Summary

• ID
  rs223029358
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:153621963 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCACTTCCC CAGATTTGTA
  TTCCTTTTTT TTTTTTTTTT TCATTCTCTT ACAAACTACT TCCGGACACT TGTTTGTTTT
  TCCTTCAGAG TTCACAACCA TCTGGTTCTG TCTGCATTCC CTTCCTCAAG GTACTCTGTG
  GGGAAGGAGG ACCCCAGTTC AATGGGTTGC ATTACGGGCC ACCTTGGTTT AAGGGAAGGT
  R
  GGACCCTCCC CCCTTTTCAC TGCCATAGAG TGAGCTGGAG GGTAGATGTT GATGAACAAG
  GGTGCAAGGG CCACCTTCTT CCTTTGTTCT GTTTTGAAGA GGTAGTTGGT TGTCCCAGCC
  TGAAAAAAAA AATCTTTCTT TTTTCTTTCC TTCTCCCCCT TCTGTGTGTT AGAGGAATGC
  ATATTTGACA GGTGCCCCCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320565075	CHEV_2_153605779	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs223029358					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:153621963 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12494	CpG island 12494	689 bp distal
Efcab8	EF-hand calcium binding domain 8	within coordinates
Gm75501	predicted gene, 75501	310 bp upstream
Rr567738	regulatory region 567738	321 bp distal
Rr567739	regulatory region 567739	220 bp distal
Tssr20916	transcription start site region 20916	808 bp downstream
Tssr20917	transcription start site region 20917	792 bp downstream
Tssr20918	transcription start site region 20918	764 bp downstream