rs223030897 SNP Detail

Summary

• ID
  rs223030897
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:4265470 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATTACTGCA GGAGGGTGTT
  GTGGGGGAGA CGCAGCCTGG CCGGACCCAG CAGGAAAAAG TCCGTCAGCG GCCGGGAGCG
  CCGAGACTGC CGGCAGCCCC TCGAGCGGCT GCCTGGCTAG GCGGCCCGTG GCAGGAGGGC
  GGGCCAGGCA GGGAGTGGAC GCGCCGGAGC GGGCAGCGGC TCAGCCGAGC CCCGAAGCCC
  R
  ACGCCCGGAC CCCGCCTCCG CCCCCGCCGC CGCCGGGAAG GGAGCGAACG GGGGGGCGGG
  GCCGGGGGCG CCGGGGCCAC ACAAGGGGAA GGCGCCATCG CCGCCGGGAG GGGTCCGAGA
  TCGAGAGGTC ACGGTCGAGA AGGTAGGGCC AGCGAACTGC CAACTTCCAC CGCCCCAGTT
  CTTGGAGCTG ATCCCCTCAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss401632958	MGP_WTSI_19_4215416	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	G	G	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs223030897					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	G	G	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss401632958	MGP_WTSI_19_4215416	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:4265470 () rs orientation: forward

Symbol	Name	Function Class
1500032F14Rik	RIKEN cDNA 1500032F14 gene	445 bp downstream
Clcf1	cardiotrophin-like cytokine factor 1	within coordinates
Cpgi10392	CpG island 10392	within coordinates
Gm45928	predicted gene, 45928	within coordinates
Gm55500	predicted gene, 55500	within coordinates
Gm59210	predicted gene, 59210	1732 bp upstream
Rr363316	regulatory region 363316	within coordinates
Rr405789	regulatory region 405789	951 bp downstream
Tssr154300	transcription start site region 154300	1053 bp downstream
Tssr154301	transcription start site region 154301	1041 bp downstream
Tssr154302	transcription start site region 154302	1019 bp downstream
Tssr154303	transcription start site region 154303	984 bp downstream
Tssr154304	transcription start site region 154304	416 bp upstream
Tssr157472	transcription start site region 157472	679 bp downstream