rs223042081 SNP Detail

Summary

• ID
  rs223042081
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:5913899 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGCAGGTCA GAATTTCAAA
  AGGAAGTCTC CTTTGGCATT GCGTGAAAGA AAAAGGAGTG ATGACTCATA CTGTTGTACC
  CTTGGCCAGG AGATAAAGTC CTTGTTCATT GTGGGACTCC CAGAAGGGCC AGGGAGTAAT
  TTCCCCTTTC CATCCTTTAC AATAGCAGAT AGCTACTCTG GAAGAATTCA CTTCTGTTGT
  Y
  AAGGTTTCTT GTTTCCCTGT GGCCAGTGCA AAGAAATCAT TAAAGTTTGG TGGTATCCAT
  AGTCCTGGAC TTGGGAAATG ACATTTAAAA ATATGCATGT GTATATGTGT GTGTGTGTGT
  GTGTGTGTGC GCATATATAT ATATATATAT ATACATATAT ATATATATAT ATATATATAT
  ATATATGCAT ATGTATATGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss387606003	MGP_WTSI_13_5863146	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs223042081					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss387606003	MGP_WTSI_13_5863146	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:5913899 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5253	CpG island 5253	1964 bp distal
Klf6	Kruppel-like transcription factor 6	within coordinates
Rr387905	regulatory region 387905	1329 bp downstream
Rr403559	regulatory region 403559	640 bp upstream
Tssr118244	transcription start site region 118244	1279 bp downstream
Tssr118245	transcription start site region 118245	1028 bp downstream
Tssr118246	transcription start site region 118246	74 bp downstream
Tssr118247	transcription start site region 118247	4 bp downstream
Tssr118248	transcription start site region 118248	586 bp upstream
Tssr118249	transcription start site region 118249	791 bp upstream
Tssr118250	transcription start site region 118250	850 bp upstream
Tssr118251	transcription start site region 118251	870 bp upstream
Tssr118252	transcription start site region 118252	950 bp upstream
Tssr121319	transcription start site region 121319	405 bp downstream
Tssr121320	transcription start site region 121320	429 bp downstream
Tssr121321	transcription start site region 121321	452 bp downstream
Tssr121322	transcription start site region 121322	473 bp downstream