rs223042994 SNP Detail

Summary

• ID
  rs223042994
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:48530060 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCTGT CCACGGTGGC GACACCTCTT
  T
  TTCAGACTCC CAAGAAGCTC AGCAG                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321793654	CHEV_6_48503125	CHEVERUD	SCREENING_POP	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs223042994					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:48530060 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17370	CpG island 17370	1331 bp proximal
Gm67220	predicted gene, 67220	within coordinates
Gm67227	predicted gene, 67227	878 bp downstream
Lrrc61	leucine rich repeat containing 61	1672 bp upstream
Rr399635	regulatory region 399635	1392 bp upstream
Rr629686	regulatory region 629686	within coordinates
Rr629687	regulatory region 629687	510 bp proximal
Rr629688	regulatory region 629688	1637 bp proximal
Rr629689	regulatory region 629689	1690 bp proximal
Tssr56137	transcription start site region 56137	1650 bp upstream
Tssr56138	transcription start site region 56138	1804 bp upstream
Tssr60734	transcription start site region 60734	1531 bp downstream
Tssr60735	transcription start site region 60735	1548 bp downstream
Tssr60736	transcription start site region 60736	1591 bp downstream