rs223049543 SNP Detail

Summary

• ID
  rs223049543
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr15:23476160 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAATATTTT CCAAAATGTC
  ATCTTCTTTA TAATTTCTTG GGGCTTTTTA AACTTTTAAT TAAGGAATAT ATCATTCCCG
  TGTTCTGGGG GCTTTATGTA AAAAATAAAT AGAACATTAA GGTACTACAC TTTGAAATTA
  CCTCGTCTAT GTATTCCTGG TAAATTGGAA TTTTTAAACA CATAAGGTAT AAACTATTTG
  G
  AGGAATATAT GTTTTTCATT TAATCTTTAA ATTTATTATA ATATAATGGC CCCAAACGTT
  CTATGATGCT TTCTGATTCC ACCCTTGTGC AAATTTTGGG ACTGTGACTC TGTTTGAAAC
  TGCCTTGTGC TGCTGTCATA TTCCAGTTTT GAGGTTTGGC AACTGAGTTT AATTTGAATA
  ACTCTCAGTT TGTGTTCTAA                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324891334	CHEV_15_23405829	CHEVERUD	SCREENING_POP	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs223049543					SNP	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:23476160 () rs orientation: forward

Symbol	Name	Function Class
Cdh18	cadherin 18	mRNA-UTR
Cpgi6966	CpG island 6966	1854 bp distal
Gm56739	predicted gene, 56739	1339 bp downstream
Tssr130794	transcription start site region 130794	1616 bp downstream