rs223050097 SNP Detail

Summary

• ID
  rs223050097
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:109723642 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTTGAAGTA TAACTAAGGC
  TTGTGTGTTG CCCCCTCCCT TGTTCTTTTC TTTCCCCAAG TCGGGTAACG GAACCTCTCC
  CTGCATGGGT TCTAGTGCAG AGCTTCATTC ACAATGTGCT GCTTTGGGCT ACATACTTGG
  CCACTTAGGA AGGCAAGTTG GAGGTTATAT AGAGAAGACT CCAGAAGACT GGGTCCTGAA
  K
  ATTGTATTTC CCTTTCCTAG AGTTTGCTTT CCAAAGCGCG AGTTATTGAT TCCGGCTCTG
  TTAAACTCCG GGGTAGTTCT CTATTCATGG ACACAGAAAA GTCAGGAAAA AGAGAATTCG
  ATACACGGCA AACTCCCCAA GTGAATATTA ACCCCTTTAC TCCGGATCCT GTACTGCTCC
  ATTCCTCAGG ACGGTGTCGT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322394514	CHEV_7_117267949	CHEVERUD	SCREENING_POP	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs223050097					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:109723642 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19571	CpG island 19571	1043 bp distal
Rr400542	regulatory region 400542	254 bp downstream
Tssr68490	transcription start site region 68490	1856 bp downstream
Tssr68491	transcription start site region 68491	1657 bp downstream
Tssr74250	transcription start site region 74250	1532 bp upstream
Tssr74251	transcription start site region 74251	1491 bp upstream
Tssr74252	transcription start site region 74252	1406 bp upstream
Wee1	WEE 1 homolog 1 (S. pombe)	Intron