rs223057047 SNP Detail

Summary

• ID
  rs223057047
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:122850594 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCGGGTGGCG GCGTGCGTGG
  CAGTCGGCCG TGGCGGGCGC AGCGGGCCTC ATGGCGGCCG GTCCGCAGTC CTCGGGTGCC
  GCCGTGTCTG CGGCCGCTTA CCCTGACTCA CCCGTGGAGT TACCCGCTCG CCTACAGAAA
  GGCGCGATGC GGCGCCGCTT CTGGGGCGTG TTCAACTGTC TGTGCGCCGG GGCGTTCGGG
  R
  CTCTGGCCGC CGCCGCCGCC AAGCTGGCCT TCGGGAGCCA GGTGCAGCCC GGGGCGCCAC
  GCGGGGGCGG GGCGGGGGGA GGGCGGGGCG GGGGGAGGGC GGGGCGGGGG GAGGGCGGGG
  CGGGGGAGGG CGGGGCGGGG CGGGGAGGAG GGCGGCTTAA CCTGGGTTCC CGCCTGCGCC
  CATGTTGGAC CACCTGGTTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss379222244	MGP_WTSI_9_122930647	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G	G	G	G	A	G	G	G	G	A	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs223057047					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G	G	G	G	A	G	G	G	G	A	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss379222244	MGP_WTSI_9_122930647	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:122850594 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22546	CpG island 22546	within coordinates
Gm9856	predicted gene 9856	within coordinates
Gm49323	predicted gene, 49323	within coordinates
Tmem42	transmembrane protein 42	within coordinates
Tssr87875	transcription start site region 87875	397 bp downstream
Tssr87876	transcription start site region 87876	155 bp downstream
Tssr92115	transcription start site region 92115	311 bp upstream
Tssr92116	transcription start site region 92116	66 bp upstream
Tssr92117	transcription start site region 92117	within coordinates