rs223059913 SNP Detail

Summary

• ID
  rs223059913
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:76300307 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ATGTACCAG GCCCTAGGGC AGCTTGGGAC
  TTCCCTATAG CTGAACAGCT TCTGCTGTGA ACAGCTGTCT GAATCCAGAC ATCTCAGGGA
  CAGCTTGTAA GGAGGCAGTT GTCTGAATCC AGCCATCTCA AGGACAACTT CTCCATCTTG
  Y
  TGGCAGGGTC AAACAACCTA GGAGCGAACA CCTACCCCAC TTCTCCAAAT GTTTTCTTAA
  CTGTCTGTTA ACAGGTAAAG AATATAGAAA TTGCTGTTTT TCTAAACCAA GGTACATATG
  TTATAAAAAT ATATAACCAA TCACCTGTCC                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324104729	CHEV_12_77354520	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs223059913					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:76300307 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4777	CpG island 4777	1354 bp proximal
Gm47525	predicted gene, 47525	642 bp downstream
Mthfd1	methylenetetrahydrofolate dehydrogenase (NADP+ dependent), methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthase	1765 bp upstream
Rr403350	regulatory region 403350	1512 bp upstream
Tssr113934	transcription start site region 113934	1676 bp upstream
Tssr113935	transcription start site region 113935	1711 bp upstream
Tssr113936	transcription start site region 113936	1757 bp upstream
Tssr113937	transcription start site region 113937	1799 bp upstream
Tssr113938	transcription start site region 113938	1815 bp upstream
Tssr113939	transcription start site region 113939	1838 bp upstream
Tssr113940	transcription start site region 113940	1920 bp upstream
Tssr113941	transcription start site region 113941	1950 bp upstream
Tssr116711	transcription start site region 116711	1513 bp downstream
Tssr116712	transcription start site region 116712	1539 bp downstream