rs223066964 SNP Detail

Summary

• ID
  rs223066964
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr13:53530639 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGAACCTCA GTATAGACGA
  GGAAAATCAA GTATGCTCTC TCGAATATTC TTCATAATGA AATTTCAGGT AGCTCTTATG
  ATGGAGCATT ATCATTACTG GTCCTAGTAA GCAGCAACTT TAGGAATGTT AGCAAGAGAA
  CTGAAATTCA CTTTCAATGA AGGTGACTTC TCTCTGCACT GTGATCAGTC GGCTTGCTCA
  K
  TCTGATCTCC AAGTTTTGGA TCTATGTGGT CCAATACAAA CCCACTAGTC ATATTTGGCC
  AACGACATTT ACATTAAAAT GCAATTACAA ATTCATTGCC ACACGCGGCA TTAGAGACTT
  CTGTAATGAG TAGTCTCTGA GAGAGATGAC ACAGATATGT CCTATAGGAT ACAGCAAGAT
  AGCTCAGTTG TCAAATCAGC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324341577	CHEV_13_53471972	CHEVERUD	SCREENING_POP	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs223066964					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:53530639 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi5620	CpG island 5620			442 bp proximal
Rr403780	regulatory region 403780			699 bp upstream
Rr480032	regulatory region 480032			784 bp proximal
Sptlc1	serine palmitoyltransferase, long chain base subunit 1			Intron
				Noncoding-Transcript-Variant
Tssr122583	transcription start site region 122583			752 bp downstream