rs223071645 SNP Detail

Summary

• ID
  rs223071645
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:110560170 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAACAACTTA TAATGATGAT
  GATGCCATAG ATTATTTGTG ACAGAAACCA GAATTTTAAT AAATATCTGT TCTAATGTTT
  TCCTTATCAC CCACTATGAG TTAGGGAACT CACACACCTA AGCAAAATGA TGTACTTGGG
  TTAATTACGT CACTATGATG ATTTTATTAC AGAACTATGC CATAATTAAC CCACATAAAA
  W
  TTTTTATACA TACCCTCAAC CATATTCTTT ATTTATTTCA GCTGCTATTT CAGCTTCAAT
  GAATTAAAAG GAAGTAAACA TGAATAAAAT GTAGTCAAGG GAGGTTTGGC CTAAGATGAT
  TGGAAAACAC AGATATTTAC ATTATGATTC AAAATAGTAG AAAAATTATA GCCGGGCAGT
  GGTGGCTCAT GCCTTTAATC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CE/J	CZECHII/EiJ	FVB/NJ	JF1/MsJ	LG/J	MOLF/EiJ	NZB/BlNJ	PL/J	PWK/PhJ	RF/J	SJL/J	SPRET/EiJ	WSB/EiJ	ZALENDE/EiJ
ss355247417	MGP_WTSI_2_110569982	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T
SNP Consensus Information
SNP					Consensus Type	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CE/J	CZECHII/EiJ	FVB/NJ	JF1/MsJ	LG/J	MOLF/EiJ	NZB/BlNJ	PL/J	PWK/PhJ	RF/J	SJL/J	SPRET/EiJ	WSB/EiJ	ZALENDE/EiJ
rs223071645					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss355247417	MGP_WTSI_2_110569982	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:110560170 () rs orientation: forward

Symbol	Name	Function Class
Ano3	anoctamin 3	within coordinates
Muc15	mucin 15	within coordinates
Tssr19336	transcription start site region 19336	1725 bp upstream
Tssr19337	transcription start site region 19337	1767 bp upstream
Tssr19338	transcription start site region 19338	1891 bp upstream