rs223079849 SNP Detail

Summary

• ID
  rs223079849
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:112790731 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATATTTGCT ATCAAACTAC
  CCCTGATTTA CTTTGTAAAT TAAACACACT CCTCGCTGTG CCTTTTCCTT CGGGTATACA
  CAACTTTTGC CAGCAGAGCT TTAACCAGCA AACGCTCCCT GTCTTGCCTC TGGCTCCTAA
  GTGCTGGGAC TAAAGGCGTA CACCTGCCTT TGTGGAACAT TTTTGTTTTG TGATTTTTTG
  G
  TTCTTTCTTG TTCACCATCC TCACATGTAA AGATTTTAAA CAAGGTGTCT GGAAACATCA
  CTGACAGATG ATAAAGGTTG GGTACCCAGA ACTCACATGA TGGCTTACAA CTCCCTATAC
  CTCCAGTTCC TTGGATCCAA TGTCCTCTGT GGCCCCAGAA GGTATATATA CACATGCACA
  CCAATAAAAG TAAAATAATT                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	DBA/1J	DBA/2J	I/LnJ	KK/HlJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J
ss387393529	MGP_WTSI_12_114065322	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	DBA/1J	DBA/2J	I/LnJ	KK/HlJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J
rs223079849					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss387393529	MGP_WTSI_12_114065322	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:112790731 () rs orientation: forward

Symbol	Name	Function Class
Cdca4	cell division cycle associated 4	within coordinates
Cpgi5185	CpG island 5185	1562 bp proximal
Gm52009	predicted gene, 52009	959 bp upstream
Rr265126	regulatory region 265126	within coordinates
Rr387795	regulatory region 387795	1724 bp upstream
Tssr117911	transcription start site region 117911	1914 bp downstream