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rs223081610 SNP Detail
Summary
  • ID
    rs223081610
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr7:28980499 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                TTTCAAAGCT GGCTAGTGGT
    TGTCTGAAGC AGTTAAAAGT TGTAACGACT CCTAAAGACG CAAACCCCAG CTGCTGGGTG
    CCAATACTAC ACTCGGAGAA CAGACGTTCC TGCATTGGCA GGCACCTTGG CAAAGCTCCT
    CCCTTCTACC AACCGCTGCT TCTCTTCTTC CTCGGGAGAT CATGGGGCTG TTGCCATATG
    Y
    GATATCAACA GGTGTCCGAA GTGCGTTTTC CCTGTACCCA AAGCGGCCAA CAGGTCTCCC
    GAACAAATTT CCACCTCTGA GGCTTGAATG CGCCCCCCAC CCCCACCCCA AGTCCCCGTC
    CCCACCCCGG GCTTTCTTTG GCCAAGCAAT TTCCGCTTCG TTGAGCTCCT CACCCACTTC
    CAGTGCCACG CCTTCCTGGG                                            
    
    Y = C/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss370878668 MGP_WTSI_7_30066093 EVA_MGPV3 EVA_MGPV3 f SNP T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs223081610 SNP T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss370878668 MGP_WTSI_7_30066093 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr7:28980499 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cpgi18754 CpG island 18754 132 bp proximal
Gm73729 predicted gene, 73729 189 bp downstream
Rr155860 regulatory region 155860 1899 bp distal
Rr167412 regulatory region 167412 within coordinates
Spint2 serine protease inhibitor, Kunitz type 2 within coordinates
Tssr2177 transcription start site region 2177 506 bp downstream
Tssr2178 transcription start site region 2178 695 bp downstream
Tssr2179 transcription start site region 2179 747 bp downstream
Tssr2180 transcription start site region 2180 826 bp downstream
Tssr71645 transcription start site region 71645 542 bp downstream
Tssr71646 transcription start site region 71646 840 bp downstream
Tssr71647 transcription start site region 71647 864 bp downstream
Tssr71648 transcription start site region 71648 905 bp downstream
Tssr71649 transcription start site region 71649 959 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory