rs223084304 SNP Detail

Summary

• ID
  rs223084304
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:72899562 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCACGTCAGT TTCTTTGCTC
  TCCCTTTGTG TTGCTCCATG TTCCGGGTTG GAGGGGGCCT CTACTATGCC ATGCCATCAA
  GAGAGCGCAA AGAGCTGTGT CCCCCGCCAA AAGGGGCCTC CTGTACCAAT GTCCGAGTCT
  CCTCTCCTGG AAGGTTATCT TCAGTCTTCA AAGACAGTCC TGAGCCTTTT GTTAAGCACC
  Y
  CTTTGTTGAA GAAGCCAGTG GGCAATGAGA TGCTTCTCTT GGATCAAAAT CAGGCTGGCA
  AATGACAACA GTCGTGAAGA TCCGGGCCTG AGTTGTCCTG GGCTTTCTAC CATCCTCCAT
  CACAGGGAAG GATGTTTGAG TCGGGCAGAG GAGACTCATG AAGCACTTGA AGGATTCTTT
  GGCCTCAGTT CCTCCTTGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss350087426	MGP_WTSI_1_72906977	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs223084304					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss350087426	MGP_WTSI_1_72906977	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:72899562 () rs orientation: forward

Symbol	Name	Function Class
Cpgi362	CpG island 362	1962 bp proximal
Igfbp5	insulin-like growth factor binding protein 5	within coordinates
Tssr7342	transcription start site region 7342	1961 bp upstream
Tssr12186	transcription start site region 12186	1914 bp upstream
Tssr12187	transcription start site region 12187	1645 bp upstream
Tssr12188	transcription start site region 12188	1329 bp upstream
Tssr12189	transcription start site region 12189	590 bp upstream
Tssr12190	transcription start site region 12190	94 bp upstream
Tssr12191	transcription start site region 12191	625 bp downstream
Tssr12192	transcription start site region 12192	1093 bp downstream
Tssr12193	transcription start site region 12193	1258 bp downstream
Tssr12194	transcription start site region 12194	1438 bp downstream
Tssr12195	transcription start site region 12195	1798 bp downstream
Tssr12196	transcription start site region 12196	1892 bp downstream
Tssr12197	transcription start site region 12197	1910 bp downstream
Tssr12198	transcription start site region 12198	1926 bp downstream