rs223089254 SNP Detail

Summary

• ID
  rs223089254
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:81149325 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGTGTCCCT AACGATGACA
  CCATTGCATA CACTAGCAAG CGTTTGTTGC AAGGACCGTG ATATAGCTGT CCCTTGTGAG
  ACTAGGCCGG GGCCTAGCAA ACACAGAAGT GGATGCTCAC AGTCAACTAT TGGATGGATC
  ACACGGCCCC CAATGGAGGA GCTAGAGAAA GTATCCAAGG AGCTAAAGAG ATCTGCAACT
  Y
  TGTAGGTGCA ACATTATGAA CTAACCAGTA TCCCGGAGCT CGTGTCTCTA GCTGCATATG
  TATCAAAAGA TGGCCTAGTC GGCCATCACT GGAAAGAGAG GCCAATTGGA CAGCCAAACT
  TTATATGCCC CAGTACAGGG GAATGCCAGG GCCAAAAAAT GGGAATGGGT GGGTAGGGGA
  GTGGGGGGAA GGATGTGGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	KK/HlJ	LP/J	NOD/ShiLtJ	NZB/BlNJ	QSi3/Ianm	RF/J	SM/J	SPRET/EiJ	WSB/EiJ
ss358629396	MGP_WTSI_3_81045940	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	C	T	T	T	T	T	T	T	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	KK/HlJ	LP/J	NOD/ShiLtJ	NZB/BlNJ	QSi3/Ianm	RF/J	SM/J	SPRET/EiJ	WSB/EiJ
rs223089254					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	C	T	T	T	T	T	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358629396	MGP_WTSI_3_81045940	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:81149325 () rs orientation: forward

Symbol	Name	Function Class
Rr578700	regulatory region 578700	917 bp proximal