rs223095827 SNP Detail

Summary

• ID
  rs223095827
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:142130330 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAGAAGAGA ACTCACCTTT
  CATCTTGAGG GTTCAAGGTA GGGGGAGGAG GATCCAGAGA GCAGCAGAGA AGTGTTAGCT
  CTTTGGGAAA AGTGAAAGAA CAGACGGCTT CTACGACAAG GCGCCAGCCC ATGGTGTTCT
  GCAAAGGACA GAATCCTGAG TGAGTGGGTG GACAATTAGG TGGTTGAGCG GACTAGCCCT
  S
  TGGCAGGGAG TATGCTCACC AAGAAGGCTG GATGACTGCC CTTCTGTCCT CTCCATCACA
  CCGGACCATG TCATGTCTTT CTGTCACATT GACCACACCT GTCATCCTCG CCTTCAGTGA
  CTGGCAGGCA CATCCACCTC TGCTGGAGAC CTGGCTATAG GGAGAAATGA AGACATGAGT
  TAATTGAACT TGCGTGGGAG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss373453163	MGP_WTSI_7_149762498	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs223095827					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss373453163	MGP_WTSI_7_149762498	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:142130330 () rs orientation: forward

Symbol	Name	Function Class
Gm56420	predicted gene, 56420	260 bp upstream
Gm56421	predicted gene, 56421	1256 bp upstream
H19	H19, imprinted maternally expressed transcript	within coordinates
Mir675	microRNA 675	471 bp downstream
Rr658231	regulatory region 658231	1542 bp proximal
Tssr2460	transcription start site region 2460	650 bp upstream
Tssr2461	transcription start site region 2461	1318 bp upstream
Tssr70212	transcription start site region 70212	1059 bp downstream
Tssr70213	transcription start site region 70213	522 bp downstream
Tssr70214	transcription start site region 70214	18 bp upstream
Tssr70215	transcription start site region 70215	355 bp upstream
Tssr70216	transcription start site region 70216	392 bp upstream
Tssr70217	transcription start site region 70217	449 bp upstream
Tssr70218	transcription start site region 70218	780 bp upstream
Tssr70219	transcription start site region 70219	819 bp upstream
Tssr70220	transcription start site region 70220	912 bp upstream
Tssr70221	transcription start site region 70221	993 bp upstream
Tssr70222	transcription start site region 70222	1008 bp upstream
Tssr70223	transcription start site region 70223	1180 bp upstream
Tssr70224	transcription start site region 70224	1237 bp upstream
Tssr70225	transcription start site region 70225	1275 bp upstream
Tssr70226	transcription start site region 70226	1372 bp upstream
Tssr70227	transcription start site region 70227	1444 bp upstream
Tssr70228	transcription start site region 70228	1467 bp upstream
Tssr75813	transcription start site region 75813	1016 bp upstream
Tssr75814	transcription start site region 75814	964 bp upstream
Tssr75815	transcription start site region 75815	800 bp upstream
Tssr75816	transcription start site region 75816	739 bp upstream
Tssr75817	transcription start site region 75817	576 bp upstream
Tssr75818	transcription start site region 75818	500 bp upstream
Tssr75819	transcription start site region 75819	330 bp upstream
Tssr75820	transcription start site region 75820	279 bp upstream
Tssr75821	transcription start site region 75821	266 bp upstream
Tssr75822	transcription start site region 75822	105 bp upstream
Tssr75823	transcription start site region 75823	62 bp upstream
Tssr75824	transcription start site region 75824	29 bp upstream
Tssr75825	transcription start site region 75825	75 bp downstream
Tssr75826	transcription start site region 75826	125 bp downstream
Tssr75827	transcription start site region 75827	150 bp downstream
Tssr75828	transcription start site region 75828	294 bp downstream
Tssr75829	transcription start site region 75829	771 bp downstream
Tssr75830	transcription start site region 75830	801 bp downstream
Tssr75831	transcription start site region 75831	821 bp downstream
Tssr75832	transcription start site region 75832	894 bp downstream
Tssr75833	transcription start site region 75833	971 bp downstream
Tssr75834	transcription start site region 75834	1237 bp downstream
Tssr75835	transcription start site region 75835	1273 bp downstream
Tssr75836	transcription start site region 75836	1295 bp downstream
Tssr75837	transcription start site region 75837	1315 bp downstream
Tssr75838	transcription start site region 75838	1392 bp downstream
Tssr75839	transcription start site region 75839	1405 bp downstream
Tssr75840	transcription start site region 75840	1447 bp downstream
Tssr75841	transcription start site region 75841	1449 bp downstream
Tssr75842	transcription start site region 75842	1486 bp downstream
Tssr75843	transcription start site region 75843	1493 bp downstream
Tssr75844	transcription start site region 75844	1500 bp downstream
Tssr75845	transcription start site region 75845	1546 bp downstream