rs223099557 SNP Detail

Summary

• ID
  rs223099557
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:181670529 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCCCAGGCC GGAGCCCCCA
  AACTCCCCCC CCCCCTTACA CTTGCCACCA CTGGTTGTTT CCTTCCTCTC GGGTTGAGAG
  TTCAAAGCAG TTCGTTAAAG CTCCCTACTT CGCCGTGCTG TTTTTAAAGG TATTTCCAAC
  ATCCCTTATT AAATACATCT GAGTGTCTTC CTGCCTCGGA AGCACTGTGG GTTCAGATGC
  R
  AGGCTGAAAT AAGTCTTTTC ATCCGCAGCG TGGCTTCAGG TGCACAGCGC TGTCACCTTC
  TCAGCTACAA ACGAGTGAGT AAGTGCGTGC CTCGGAGCCC TTCCTAAGAA AGAGTGCTCA
  CCACGATTTG ATTTGTCATT GCCGTTGGGG TTGCCCTGGG TGGAAATCTA AACCACAGAT
  GTGTGCATCA AGAAACCTCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss352618160	MGP_WTSI_1_183773095	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs223099557					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss352618160	MGP_WTSI_1_183773095	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:181670529 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1138	CpG island 1138	within coordinates
Lbr	lamin B receptor	596 bp upstream
Rr396678	regulatory region 396678	442 bp downstream
Rr424803	regulatory region 424803	596 bp distal
Rr424804	regulatory region 424804	95 bp distal
Rr424805	regulatory region 424805	377 bp distal
Tssr10531	transcription start site region 10531	416 bp downstream
Tssr10532	transcription start site region 10532	399 bp downstream
Tssr15588	transcription start site region 15588	1944 bp upstream
Tssr15589	transcription start site region 15589	651 bp upstream
Tssr15590	transcription start site region 15590	580 bp upstream
Tssr15591	transcription start site region 15591	70 bp downstream