rs223100397 SNP Detail

Summary

• ID
  rs223100397
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:20724338 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCTGGTAAA GCCATAAAAA
  AAGTCTGGAA AATGTGGAAA AATCTGGAAA GGAAAGAAAA AAAAAAAAAA AAAAAAAAGC
  ATGAAACTCA GCAATACTTT ACAGACTGCG TCCATGACGG GATACACCAC ATACGCATGC
  GCAACATCCG GGTTTCCGGA AGCGTGCCTA AGGCCGACGT GGCAGAAGGA GTGGCCTAGC
  M
  CTAGAGCATG GGGCGGAACT TCCGGGGACG GCACGCCAGC CCCCCCCCCC TCGGAACCGG
  AAGTTGAGCC TGGGAGCCTT GACGTTAGGA ACGAAGTCGA ACCTGGATCT GGAGCCGGGT
  GAGGAGTGGC ATCGCGAGGT TGCGTGGTGG GGAGGAATGC TGAGGAGAGG CCAGGGTATT
  TTTGGCCTGA TCGCTGTCCG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss390473147	MGP_WTSI_14_21493492	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs223100397					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss390473147	MGP_WTSI_14_21493492	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:20724338 () rs orientation: forward

Symbol	Name	Function Class
4733401D01Rik	RIKEN cDNA 4733401D01 gene	59 bp upstream
Cpgi6207	CpG island 6207	within coordinates
Rr287464	regulatory region 287464	938 bp distal
Rr296876	regulatory region 296876	within coordinates
Rr389336	regulatory region 389336	within coordinates
Sec24c	SEC24 homolog C, COPII coat complex component	38 bp upstream
Tssr124386	transcription start site region 124386	28 bp upstream
Tssr124387	transcription start site region 124387	41 bp upstream
Tssr124388	transcription start site region 124388	226 bp upstream
Tssr127653	transcription start site region 127653	144 bp upstream
Tssr127654	transcription start site region 127654	438 bp downstream