rs223103721 SNP Detail

Summary

• ID
  rs223103721
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:106479094 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACACTAGAA GCCAGGTGGG
  CCCCTGAGGG AGACAGCATA GAGCAAGAAG ACAGCAGTCT CAGAGCAGGG AGCAGGACCG
  GCTGGACACT GATCCAGATG AGTGAAGCCC AGGCATACCC AGGGCAGGCA TTCATTGGTT
  TTACCTAGGT ATCTCCTGGT CCCTCACAGG GAACTGCGTC CTGTCACAGA GGAGGAAAGC
  S
  GAAGTATAAG GGGTAGTGCT TTTTATTAGG GATGGAGAAA CAGAAGTAGA ACCTAGCACC
  TAGGCACCTT AGTTTTTGCT GTTTGGGCCC CTGCTGAGCA GAGGAGAGCC AAGATATTCA
  GTTGAGAGGC CAGATGCACA GACTGGAGGG GCGGTGGCCT GCTGTGTTCA GCGGAAGCGC
  TCTAGAATAC ACACACAGCT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321246851	CHEV_4_106294502	CHEVERUD	SCREENING_POP	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs223103721					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:106479094 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14527	CpG island 14527	486 bp proximal
Rr596780	regulatory region 596780	45 bp proximal
Tssr38185	transcription start site region 38185	527 bp upstream
Tssr38186	transcription start site region 38186	589 bp upstream
Tssr38187	transcription start site region 38187	631 bp upstream
Ttc22	tetratricopeptide repeat domain 22	552 bp upstream