rs223104871 SNP Detail

Summary

• ID
  rs223104871
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:123129040 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACATCTACG TTGGCTCAGC
  TGCATTCTCT GGGCAGCCCT TCTAACCATC CCTGTGAAAA CCAGGGGCCA GCTGGTGCTG
  TAACGCAGTC CTGGGATATT TGGCCTAGCA AGCCTAAGGC CCTGGGTTCC ATACCCATTG
  ACATGGGGAT GTGGACCACT TTATCTGGCT CTTCTTGTGA GAAAGAATAC GTTTGAAGGG
  K
  ATGTCTCATG GCCTTGTTGC TCTGCTTTGT AAGTGAGGAT GCTGGGATTC AGAAAGGCAG
  AAACGACTCG CTCTCAGTCA TGCTGCTTAC CCTTTCAAAT GTCCACCGAC TTCATTTATG
  CTTCAGAATG AAATAAAGGA GGGGCCCAGG GTTGAGAATC AGTGGATTAC AGAATTAAAG
  CAAAACTGTC AAATAGGATG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss366530182	MGP_WTSI_5_123440986	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs223104871					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss366530182	MGP_WTSI_5_123440986	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:123129040 () rs orientation: forward

Symbol	Name	Function Class
A930024E05Rik	RIKEN cDNA A930024E05 gene	within coordinates
Cpgi16566	CpG island 16566	1444 bp distal
Gm44574	predicted gene 44574	within coordinates
Gm73435	predicted gene, 73435	within coordinates
Kdm2b	lysine (K)-specific demethylase 2B	1707 bp upstream
Tssr48730	transcription start site region 48730	1725 bp downstream
Tssr48731	transcription start site region 48731	1696 bp downstream
Tssr48732	transcription start site region 48732	1662 bp downstream
Tssr48733	transcription start site region 48733	1611 bp downstream
Tssr48734	transcription start site region 48734	1365 bp downstream
Tssr48735	transcription start site region 48735	1238 bp downstream
Tssr48736	transcription start site region 48736	1215 bp downstream
Tssr48737	transcription start site region 48737	1034 bp downstream
Tssr48738	transcription start site region 48738	208 bp downstream
Tssr48739	transcription start site region 48739	197 bp downstream
Tssr48740	transcription start site region 48740	152 bp downstream
Tssr48741	transcription start site region 48741	113 bp downstream
Tssr53171	transcription start site region 53171	1897 bp upstream
Tssr53172	transcription start site region 53172	1866 bp upstream
Tssr53173	transcription start site region 53173	1697 bp upstream
Tssr53174	transcription start site region 53174	1639 bp upstream
Tssr53175	transcription start site region 53175	687 bp upstream
Tssr53176	transcription start site region 53176	570 bp upstream
Tssr53177	transcription start site region 53177	514 bp upstream
Tssr53178	transcription start site region 53178	482 bp upstream
Tssr53179	transcription start site region 53179	448 bp upstream
Tssr53180	transcription start site region 53180	404 bp upstream