rs223114638 SNP Detail

Summary

• ID
  rs223114638
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:3648456 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCTCAGCCC ATTAGGTGTA
  GCTCCTCCAA CCAGTTTTAG CCCCTCCCAC AAAGCTTAGC TCCCCCTATC AAGCCTACCT
  CCATTTTCCA AGCCTAGCTT TTCCATCAAG CTAAGGGTGT CACACTCAGT TCTGCAGATC
  ATACCTGGCT CCTCCCTCAA GTTGCTATAC CCTTCCACTC CTCAGGTTCC TCCAGTTCTG
  K
  CCTTGGTTTC TCTAGATGGG CTACTCTATT GTAAATCCTG GTGTCTTAGC TCAAAACCCA
  GCCCATGTGT GACCTCTTTC ATAACTGTAG CTCTCAAGGT CCCACCCAGC AATCCCTGAC
  CCCACACCAT TCCCTGGCCC CACTCCTCCC ACTTCTCTGG GATTGGAGGC AGAAAGAGTA
  GCTCCCTGCC CAGTCTTCTG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss373511580	MGP_WTSI_8_3598456	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs223114638					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss373511580	MGP_WTSI_8_3598456	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:3648456 () rs orientation: forward

Symbol	Name	Function Class
Camsap3	calmodulin regulated spectrin-associated protein family, member 3	within coordinates
Rr189485	regulatory region 189485	within coordinates
Rr189486	regulatory region 189486	1902 bp proximal
Rr381636	regulatory region 381636	within coordinates
Tssr76064	transcription start site region 76064	1932 bp downstream
Tssr76065	transcription start site region 76065	131 bp downstream
Tssr76066	transcription start site region 76066	107 bp downstream
Tssr76067	transcription start site region 76067	87 bp downstream
Tssr76068	transcription start site region 76068	55 bp downstream
Tssr76069	transcription start site region 76069	2 bp downstream
Tssr76070	transcription start site region 76070	137 bp upstream
Tssr76071	transcription start site region 76071	186 bp upstream
Tssr76072	transcription start site region 76072	1065 bp upstream