rs223116363 SNP Detail

Summary

• ID
  rs223116363
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:59039935 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGAAAGTGC ACACAAATGT
  TCTGTCTTGA CCTGTTTTCT TTTCTGAAAT AACCCTGTTG TGAGTTTCAG GCTCACCTGG
  ACTTCCTGTA GGAGCTCAGC AGCCTCAGAG CTTGTAGTCC TTGTGTCTTT GTACTTGTGG
  ATGGAGTTAG GTGTGTGCCC CACACCTGGC CTTTGGGTTT TAAATAGTGT CTCTCAGAGC
  W
  GAGTCTGAAC ACCTCACCTT ACCCCAGCCT CTCCAGTGCT GGGATTACAG GTTCAAACCA
  CCACACTCAG TCTCTTGACC ACTTCTCAGG GATGGTTCAG TGACATATGT GTTACCTCAT
  TGTCACGAAA CCATGACCAC CATCATTCTC AGAAATCTGT TCATCTTGCA AAACTGAAAC
  TCTAACACCA TTACAAAAGC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss358113081	MGP_WTSI_3_58936436	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs223116363					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358113081	MGP_WTSI_3_58936436	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:59039935 () rs orientation: forward

Symbol	Name	Function Class
Med12l	mediator complex subunit 12-like	within coordinates
P2ry14	purinergic receptor P2Y, G-protein coupled, 14	within coordinates
Tssr29228	transcription start site region 29228	648 bp downstream
Tssr29229	transcription start site region 29229	196 bp downstream
Tssr33381	transcription start site region 33381	1971 bp upstream
Tssr33382	transcription start site region 33382	1911 bp upstream
Tssr33383	transcription start site region 33383	1886 bp upstream
Tssr33384	transcription start site region 33384	1874 bp upstream
Tssr33385	transcription start site region 33385	1854 bp upstream
Tssr33386	transcription start site region 33386	1823 bp upstream
Tssr33387	transcription start site region 33387	1750 bp upstream
Tssr33388	transcription start site region 33388	1433 bp upstream
Tssr33389	transcription start site region 33389	1420 bp upstream
Tssr33390	transcription start site region 33390	1373 bp upstream
Tssr33391	transcription start site region 33391	1275 bp upstream