rs223118904 SNP Detail

Summary

• ID
  rs223118904
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:40368650 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAGAA TCCACTTCAG GCCTGGTGGT
  A
  GTGGTAGCAC ACACCTTTAG TTCTA                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322916259	CHEV_9_40264939	CHEVERUD	SCREENING_POP	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs223118904					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:40368650 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21594	CpG island 21594	987 bp distal
Gramd1b	GRAM domain containing 1B	within coordinates
Rr676839	regulatory region 676839	1929 bp distal
Rr676840	regulatory region 676840	1100 bp distal
Rr676841	regulatory region 676841	1498 bp distal
Rr676842	regulatory region 676842	1327 bp proximal
Rr676843	regulatory region 676843	1698 bp proximal
Tssr84450	transcription start site region 84450	1444 bp downstream
Tssr84451	transcription start site region 84451	301 bp upstream
Tssr84452	transcription start site region 84452	329 bp upstream
Tssr84453	transcription start site region 84453	1070 bp upstream
Tssr88934	transcription start site region 88934	1970 bp upstream
Tssr88935	transcription start site region 88935	1919 bp upstream
Tssr88936	transcription start site region 88936	1898 bp upstream
Tssr88937	transcription start site region 88937	1834 bp upstream
Tssr88938	transcription start site region 88938	1577 bp upstream
Tssr88939	transcription start site region 88939	1542 bp upstream
Tssr88940	transcription start site region 88940	1510 bp upstream
Tssr88941	transcription start site region 88941	1221 bp upstream
Tssr88942	transcription start site region 88942	1206 bp upstream
Tssr88943	transcription start site region 88943	1178 bp upstream
Tssr88944	transcription start site region 88944	1130 bp upstream
Tssr88945	transcription start site region 88945	1113 bp upstream
Tssr88946	transcription start site region 88946	1017 bp upstream
Tssr88947	transcription start site region 88947	988 bp upstream
Tssr88948	transcription start site region 88948	958 bp upstream
Tssr88949	transcription start site region 88949	118 bp downstream