rs223122056 SNP Detail

Summary

• ID
  rs223122056
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:70703003 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGCAGGTG GCCCAGATTA
  CAGTTGACCT GTTCTGGTGT GGCTAAAAAT TGTCCCATGT GGTTACAAAC CATTAGACCA
  GGGTCTGATG AATTGCTCAG AATATTTCTG GACACCCAAA TACAGACCCT GGCTTAAGGC
  CCTGTCCATA CAGTAGGTTT AGCTTGGCTA CACCAAAGGA AGCCATACAG AGGCTAATAT
  Y
  AGAGTATTCT TGGAAGAGAC AGGAGAAAAT GAAAGCCAGT TTCTGCTCTT ACCTTATGTG
  CTTGTGTTCA GACTCCCAAA CATCAGGAGT GTCAGATAAA CTGGTCTGAA TCTCTGTCTG
  AAGCATGGAA CTGAAAAGAA TGTAGTTTCA GGGAAGAAAG GCAATAGAAG GAAGCCTGAG
  AATATCTTCA AAGGGTCAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321815798	CHEV_6_70676013	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs223122056					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:70703003 () rs orientation: forward

Symbol	Name	Function Class
Gm68839	predicted gene, 68839	427 bp downstream
Igk	immunoglobulin kappa chain complex	within coordinates
Igkc	immunoglobulin kappa constant	416 bp upstream
Rr158	regulatory region 158	68 bp distal
Rr150202	regulatory region 150202	within coordinates
Rr399684	regulatory region 399684	584 bp downstream
Rr399685	regulatory region 399685	172 bp downstream
Rr399686	regulatory region 399686	492 bp upstream
Tssr1880	transcription start site region 1880	831 bp upstream
Tssr56956	transcription start site region 56956	186 bp downstream
Tssr56957	transcription start site region 56957	411 bp upstream
Tssr56958	transcription start site region 56958	458 bp upstream
Tssr56959	transcription start site region 56959	476 bp upstream
Tssr56960	transcription start site region 56960	499 bp upstream
Tssr56961	transcription start site region 56961	513 bp upstream
Tssr56962	transcription start site region 56962	521 bp upstream
Tssr56963	transcription start site region 56963	570 bp upstream
Tssr56964	transcription start site region 56964	585 bp upstream
Tssr56965	transcription start site region 56965	591 bp upstream
Tssr56966	transcription start site region 56966	602 bp upstream
Tssr56967	transcription start site region 56967	617 bp upstream
Tssr56968	transcription start site region 56968	641 bp upstream
Tssr56969	transcription start site region 56969	677 bp upstream
Tssr56970	transcription start site region 56970	690 bp upstream
Tssr56971	transcription start site region 56971	710 bp upstream
Tssr56972	transcription start site region 56972	736 bp upstream
Tssr56973	transcription start site region 56973	774 bp upstream
Tssr56974	transcription start site region 56974	806 bp upstream
Tssr56975	transcription start site region 56975	839 bp upstream
Tssr61321	transcription start site region 61321	463 bp downstream
Tssr61322	transcription start site region 61322	628 bp downstream
Tssr61323	transcription start site region 61323	643 bp downstream
Tssr61324	transcription start site region 61324	733 bp downstream
Tssr61325	transcription start site region 61325	799 bp downstream
Tssr61326	transcription start site region 61326	834 bp downstream
Tssr61327	transcription start site region 61327	848 bp downstream
Tssr61328	transcription start site region 61328	939 bp downstream