rs223123772 SNP Detail

Summary

• ID
  rs223123772
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:151824693 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATCTGGGCT ATGTAACCCA
  GTGATCACTG AGCTAATAAG AAGCTAGAAG CTGGAAACAA CCCAGATGTC CCTGAGAGGA
  AAAATGAATA CAGAAAATGT GGTACATTTA CACAATGAAT ATTGCTCAGC TATTAAAAAC
  AATGACTTCA TGAAATTCTC AGGCAAATGG ATGAAACTAG AAAATATAAT CCTGAGTGAG
  R
  TAACCCAGTA CAAAAGAACA CACAGGAGAA GACGGGGAAG GAAAAAAGCT GGCCAGTTCA
  GATATGGGAA GAATGGGGAG AAGTATAGAG GGTTGGGAAT TTGAAAGTAG GTGTGAAGCA
  GTGGGGAAGG GGGAACTGAG GGTAGCCACT AGAAAGTCCC AGAGGCCTGG GACCCAAGAG
  GTCCCCAGGA CCCAACAGGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321028131	CHEV_3_151782020	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs223123772					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:151824693 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gipc2	GIPC PDZ domain containing family, member 2			Intron
				Noncoding-Transcript-Variant
Rr587460	regulatory region 587460			1050 bp proximal
Tssr1098	transcription start site region 1098			1040 bp downstream
Tssr32394	transcription start site region 32394			1254 bp upstream