rs223126102 SNP Detail

Summary

• ID
  rs223126102
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:122269485 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGACAGTGG GGAGGGCCAC
  GCCCTCCCCT AATCTGCATA ATCCCCTCCC ACTTCCGTGG ACCAGTAATT CCTGTTGTAC
  ACTGGAGAGA ATTTAGTAAC TGAATTTTAA CCTGGGGAAT CTAGGTCAGC CAGTTCCATG
  GGGCTCTATG AATCATACTA GCATGGGGAG AGAAACCATA AACACCAAAA CCTCAAGGCT
  W
  AGCCAGACCA GAAGATGTCA CTGGATCGCG TCCTATCACA CCAGACAGGA AGAACTTTTC
  ATGAGACAAT TTGAAATGAA ATTTCTGGGG ACTTATAAAT CATGAGAGTT GTGGCAGTGT
  GAATGTCTAA GTCGATTTGG CATACAAACA AGCGCCTACT GTGTGCTTAG TGTTGTGGGG
  AACTGAGCTG TGGTTCAGCC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss366511367	MGP_WTSI_5_122581431	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs223126102					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss366511367	MGP_WTSI_5_122581431	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:122269485 () rs orientation: forward

Symbol	Name	Function Class
Ccdc63	coiled-coil domain containing 63	within coordinates
Cpgi16543	CpG island 16543	1550 bp distal
Cpgi16544	CpG island 16544	361 bp proximal
Rr399322	regulatory region 399322	52 bp downstream
Rr619773	regulatory region 619773	1754 bp distal
Rr619775	regulatory region 619775	654 bp distal
Rr619776	regulatory region 619776	within coordinates
Rr619777	regulatory region 619777	4 bp proximal
Rr619778	regulatory region 619778	462 bp proximal
Rr619779	regulatory region 619779	571 bp proximal
Tssr48636	transcription start site region 48636	521 bp upstream
Tssr53079	transcription start site region 53079	1001 bp upstream
Tssr53080	transcription start site region 53080	536 bp downstream
Tssr53081	transcription start site region 53081	554 bp downstream
Tssr53082	transcription start site region 53082	566 bp downstream