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rs223127834 SNP Detail
Summary
  • ID
    rs223127834
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr7:44129536 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                TACATTCTTC CTCTTCCTTC
TTTTCATCCT CATCTTCCCA TCACTGTCTC CTTTCTAGCT TTCTCCTCCT CCTCCTCCTC
CTCCTCCTCC TCCTCCTCCT CTTCCTCCTT CTCTGGCTCT GTCTCCCCTT CCTTGCCCTC
TCTCTTTCTC TTCTTTTTCT CCTCCCTGTC CTCTCCCTCT TGCTATTCTT CCTTTCCTTC
Y
TCTGCCTCTT CAGTTTCCTC TTTTTATTCC TTGACACCTT GCCATATTCT AAAATCCTCA
TCCTCTTTCT TTGTTGTCTT CTTCTTGAGA TCTCTTTCAC CCTTCCTTCT CCTACTTCTC
TGGTGTCTTA CTCCCCCCCC CCCACACACA CACCTTCTCC TTATCTCACC CTCTCCCTGC
ATCTCCTCTT TCTCCAACTT                                            

Y = C/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss371156131 MGP_WTSI_7_51735482 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C T C C C C C C C C C C C C C C T C C C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs223127834 SNP C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C T C C C C C C C C C C C C C C T C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss371156131 MGP_WTSI_7_51735482 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr7:44129536 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Tssr2227 transcription start site region 2227 1092 bp downstream
Tssr2228 transcription start site region 2228 29 bp downstream
Tssr2229 transcription start site region 2229 242 bp upstream
Tssr2230 transcription start site region 2230 421 bp upstream
Tssr2231 transcription start site region 2231 554 bp upstream
Tssr2232 transcription start site region 2232 729 bp upstream
Tssr2233 transcription start site region 2233 762 bp upstream
Tssr2234 transcription start site region 2234 921 bp upstream
Tssr2235 transcription start site region 2235 1555 bp upstream
Tssr66265 transcription start site region 66265 1982 bp downstream
Tssr66266 transcription start site region 66266 1965 bp downstream
Tssr66267 transcription start site region 66267 1928 bp downstream
Tssr66268 transcription start site region 66268 1912 bp downstream
Tssr66269 transcription start site region 66269 1876 bp downstream
Tssr66270 transcription start site region 66270 1841 bp downstream
Tssr66271 transcription start site region 66271 1809 bp downstream
Tssr66272 transcription start site region 66272 1757 bp downstream
Tssr66273 transcription start site region 66273 1739 bp downstream
Tssr66274 transcription start site region 66274 1734 bp downstream
Tssr66275 transcription start site region 66275 1714 bp downstream
Tssr66276 transcription start site region 66276 1694 bp downstream
Tssr66277 transcription start site region 66277 1674 bp downstream
Tssr66278 transcription start site region 66278 1630 bp downstream
Tssr66279 transcription start site region 66279 1585 bp downstream
Tssr66280 transcription start site region 66280 1563 bp downstream
Tssr66281 transcription start site region 66281 1523 bp downstream
Tssr66282 transcription start site region 66282 1506 bp downstream
Tssr66283 transcription start site region 66283 1492 bp downstream
Tssr66284 transcription start site region 66284 1480 bp downstream
Tssr66285 transcription start site region 66285 1466 bp downstream
Tssr66286 transcription start site region 66286 1427 bp downstream
Tssr66287 transcription start site region 66287 1391 bp downstream
Tssr66288 transcription start site region 66288 1366 bp downstream
Tssr66289 transcription start site region 66289 1284 bp downstream
Tssr66290 transcription start site region 66290 1246 bp downstream
Tssr66291 transcription start site region 66291 1220 bp downstream
Tssr66292 transcription start site region 66292 1188 bp downstream
Tssr66293 transcription start site region 66293 1166 bp downstream
Tssr66294 transcription start site region 66294 1142 bp downstream
Tssr66295 transcription start site region 66295 877 bp downstream
Tssr66296 transcription start site region 66296 706 bp downstream
Tssr66297 transcription start site region 66297 682 bp downstream
Tssr66298 transcription start site region 66298 627 bp downstream
Tssr66299 transcription start site region 66299 607 bp downstream
Tssr66300 transcription start site region 66300 584 bp downstream
Tssr66301 transcription start site region 66301 568 bp downstream
Tssr66302 transcription start site region 66302 527 bp downstream
Tssr66303 transcription start site region 66303 518 bp downstream
Tssr66304 transcription start site region 66304 513 bp downstream
Tssr66305 transcription start site region 66305 474 bp downstream
Tssr66306 transcription start site region 66306 420 bp downstream
Tssr66307 transcription start site region 66307 371 bp downstream
Tssr66308 transcription start site region 66308 354 bp downstream
Tssr66309 transcription start site region 66309 304 bp downstream
Tssr66310 transcription start site region 66310 235 bp downstream
Tssr66311 transcription start site region 66311 212 bp downstream
Tssr66312 transcription start site region 66312 193 bp downstream
Tssr66313 transcription start site region 66313 183 bp downstream
Tssr66314 transcription start site region 66314 165 bp downstream
Tssr66315 transcription start site region 66315 158 bp downstream
Tssr66316 transcription start site region 66316 93 bp downstream
Tssr66317 transcription start site region 66317 77 bp downstream
Tssr66318 transcription start site region 66318 36 bp downstream
Tssr66319 transcription start site region 66319 8 bp downstream
Tssr66320 transcription start site region 66320 5 bp upstream
Tssr66321 transcription start site region 66321 23 bp upstream
Tssr66322 transcription start site region 66322 43 bp upstream
Tssr66323 transcription start site region 66323 89 bp upstream
Tssr66324 transcription start site region 66324 118 bp upstream
Tssr66325 transcription start site region 66325 148 bp upstream
Tssr66326 transcription start site region 66326 189 bp upstream
Tssr66327 transcription start site region 66327 203 bp upstream
Tssr66328 transcription start site region 66328 219 bp upstream
Tssr66329 transcription start site region 66329 258 bp upstream
Tssr66330 transcription start site region 66330 277 bp upstream
Tssr66331 transcription start site region 66331 291 bp upstream
Tssr66332 transcription start site region 66332 312 bp upstream
Tssr66333 transcription start site region 66333 360 bp upstream
Tssr66334 transcription start site region 66334 372 bp upstream
Tssr66335 transcription start site region 66335 381 bp upstream
Tssr66336 transcription start site region 66336 390 bp upstream
Tssr66337 transcription start site region 66337 408 bp upstream
Tssr66338 transcription start site region 66338 464 bp upstream
Tssr66339 transcription start site region 66339 515 bp upstream
Tssr66340 transcription start site region 66340 560 bp upstream
Tssr66341 transcription start site region 66341 605 bp upstream
Tssr66342 transcription start site region 66342 667 bp upstream
Tssr66343 transcription start site region 66343 699 bp upstream
Tssr66344 transcription start site region 66344 844 bp upstream
Tssr66345 transcription start site region 66345 877 bp upstream
Tssr66346 transcription start site region 66346 933 bp upstream
Tssr66347 transcription start site region 66347 971 bp upstream
Tssr66348 transcription start site region 66348 1012 bp upstream
Tssr66349 transcription start site region 66349 1036 bp upstream
Tssr66350 transcription start site region 66350 1064 bp upstream
Tssr66351 transcription start site region 66351 1072 bp upstream
Tssr66352 transcription start site region 66352 1108 bp upstream
Tssr66353 transcription start site region 66353 1182 bp upstream
Tssr66354 transcription start site region 66354 1196 bp upstream
Tssr66355 transcription start site region 66355 1223 bp upstream
Tssr66356 transcription start site region 66356 1240 bp upstream
Tssr66357 transcription start site region 66357 1254 bp upstream
Tssr66358 transcription start site region 66358 1266 bp upstream
Tssr66359 transcription start site region 66359 1292 bp upstream
Tssr66360 transcription start site region 66360 1304 bp upstream
Tssr66361 transcription start site region 66361 1330 bp upstream
Tssr66362 transcription start site region 66362 1362 bp upstream
Tssr66363 transcription start site region 66363 1379 bp upstream
Tssr66364 transcription start site region 66364 1412 bp upstream
Tssr66365 transcription start site region 66365 1432 bp upstream
Tssr66366 transcription start site region 66366 1452 bp upstream
Tssr66367 transcription start site region 66367 1480 bp upstream
Tssr66368 transcription start site region 66368 1502 bp upstream
Tssr66369 transcription start site region 66369 1536 bp upstream
Tssr66370 transcription start site region 66370 1578 bp upstream
Tssr72200 transcription start site region 72200 1671 bp upstream
Tssr72201 transcription start site region 72201 1161 bp upstream
Tssr72202 transcription start site region 72202 304 bp upstream
Tssr72203 transcription start site region 72203 67 bp downstream
Tssr72204 transcription start site region 72204 663 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory