rs223135438 SNP Detail

Summary

• ID
  rs223135438
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:7866598 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACTTCTTGC TTTCGAATCG
  ATCTGCATCT TGGTGTCTCA CTCAGAGGGC ATCTCAAAGT GTCACTGACT GAGGGTCAGG
  GTCTTATATA TGCTCGGGGG TTACCGAACA TATACAAGAG CAGGTAAAGT ACATCAGATA
  ATGTGTAGGT GACAAGTTTG GTTTTGCATA GTGCAGTTTC CTAGAGTTCT GTTCTATTCC
  R
  ATGTACAAAG TTGGTAGTTG GGGAACAGTC AGAAATTGTG ACTGCTTTCT GATTTCTATT
  TTCTGGTGTA AGAAGCAAGA TAAAAGCCTT TTCATTGAGT AAGCGTTGGT AGGTTTAGAA
  GACGTTACAC AGCTCATTAA GGAAGCGGGA GAAATGGATT AACAGACTTA GGGATTTGCC
  CATATGCACT TTTGGAGTGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325523060	CHEV_18_7866596	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs223135438					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:7866598 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9688	CpG island 9688	1838 bp proximal
Gm9993	predicted gene 9993	1420 bp downstream
Rr533616	regulatory region 533616	1744 bp proximal
Tssr149978	transcription start site region 149978	1875 bp upstream