rs223136719 SNP Detail

Summary

• ID
  rs223136719
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:110009045 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ggagactta atatcctagg aattattatt
  atttttttaa gctagcatct aggcatctgg gtttgggaag attgtaattc taggtgctga
  tatctgttct tgtctttgtt gggtgggtct ttgttccttt gtttctgttg ctctctctgg
  Y
  tcttaggaga gtgtattggc tgtgtgatgc ctggtaggat ttttctgaga acctgatagg
  tgtggccact gggccttcca ggtaaaatgg gaactgagac ttaggaatgg agatgggttc
  taggggCCGA GGAAAGGGAA AACAGAGTAG                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321255178	CHEV_4_109824453	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs223136719					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:110009045 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14586	CpG island 14586	671 bp proximal
Gm33070	predicted gene, 33070	821 bp upstream
Rr84118	regulatory region 84118	356 bp proximal
Tssr38368	transcription start site region 38368	805 bp upstream