rs223139939 SNP Detail

Summary

• ID
  rs223139939
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:59439203 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACAGAGTCC ACCACGTCTT
  AAGATTAGTG CAATATTAGA GAAAGGACAA TATTAGATCA AGGAGAAACT GTGAATGTCG
  CTTAGATCTA TGCTTTGGGT GGACTGTGGT GGGAGACTGG GGAGCAGAGG GTTAACGTGA
  GTTAGGAATT GGGGTTGAGG GAGGCTGAGG AAGGAAGATC AGTTTTGTCT GTGGGGCCCG
  Y
  CCAAGTGCAG GGGGCACTCC CCACTTCAGC AGGTACCCTC ATTTGCTTTC TCACCGGTGA
  ACTAGCCCTA CCTCTAAGGC AGGCAAATAC ACCCATATAA GGGCTGAACT TGGGCTGCCT
  TAGGAAGAAA CCGTTAAAAT AAACTTCCTA GTCTCTTGTA ACAAGTTTTC TTGAAGATTA
  TTTCTGTCCA ACAAAGAAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321141032	CHEV_4_59452075	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs223139939					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:59439203 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14346	CpG island 14346	410 bp distal
Susd1	sushi domain containing 1	570 bp upstream
Tssr37430	transcription start site region 37430	1028 bp downstream
Tssr37431	transcription start site region 37431	935 bp upstream
Tssr41933	transcription start site region 41933	898 bp upstream
Tssr41934	transcription start site region 41934	777 bp upstream
Tssr41935	transcription start site region 41935	524 bp upstream